BO34143.complete Sequence
1123 bp assembled on 2013-05-22
GenBank Submission: KX795060
> BO34143.complete
GAAGTTATCAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGC
TGCAGGATGAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAG
GGAATCCTCGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCA
GGACATCGGCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGC
TGTTGTTCAGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATC
CTGTTCCACGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGC
CGAGATCCTGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGG
GTGTTGTCCCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTG
GATGACCTGGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTT
CGCCAAGTGGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACC
AGTCGATCCTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGC
CAGTCGCAGCGCATCGTCCCAATTGTGGAGCCCGAGGTTCTGCCCGATGG
CGATCACGATCTGGACCGCGCCCAGAAGGTCACCGAGACCGTCCTGGCCG
CCGTCTACAAGGCCCTGAGCGACCACCACGTCTACCTGGAGGGTACTCTG
CTGAAGCCCAACATGGTCACCGCCGGTCAGTCGGCCAAGAAGAACACCCC
CGAGGAGATCGCCCTGGCCACCGTGCAGGCTCTGCGCCGCACCGTTCCCG
CCGCCGTTACTGGCGTGACCTTCCTGTCTGGAGGTCAGTCCGAGGAGGAG
GCCACCGTCAACCTGAGTGCCATCAACAACGTTCCCTTGATCCGCCCATG
GGCCCTCACCTTCTCGTACGGTCGTGCCCTGCAGGCCTCCGTCCTGCGTG
CCTGGGCTGGCAAGAAGGAGAACATTGCTGCCGGCCAGAACGAGCTGCTT
AAGCGCGCCAAGGCTAACGGAGAGGCGGCTTGTGGTAACTATACAGCTGG
ATCGGTTAAGGGGTTCGCTGGAAAAGATACTTTGCATGTGGATGACCACA
GGTATGCAAGCTTTCTAGACCAT
BO34143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RI | 1092 | CG6058-PI | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| Ald-RE | 1092 | CG6058-PE | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| Ald-RM | 1086 | CG6058-PM | 1..1014 | 17..1030 | 5010 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RI | 1736 | CG6058-RI | 249..1337 | 17..1105 | 5445 | 100 | Plus |
| Ald-RE | 1747 | CG6058-RE | 260..1348 | 17..1105 | 5445 | 100 | Plus |
| Ald-RM | 2102 | CG6058-RM | 278..1291 | 17..1030 | 5010 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26258020 | 813..17 | 3985 | 100 | Minus |
| 3R | 32079331 | 3R | 26256932..26257137 | 1013..808 | 1015 | 99.5 | Minus |
| 3R | 32079331 | 3R | 26414213..26414832 | 98..717 | 505 | 72.1 | Plus |
| 3R | 32079331 | 3R | 26256531..26256629 | 1105..1007 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:42:52 has no hits.
BO34143.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 11:24:03 Download gff for
BO34143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RE | 258..1346 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:12:57 Download gff for
BO34143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RE | 260..1348 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:24 Download gff for
BO34143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RE | 260..1348 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:24 Download gff for
BO34143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26256528..26256623 | 1013..1107 | 97 | <- | Minus |
| 3R | 26256933..26257132 | 813..1012 | 100 | <- | Minus |
| 3R | 26257225..26258020 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:12:57 Download gff for
BO34143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22082250..22082345 | 1013..1107 | 97 | <- | Minus |
| arm_3R | 22082655..22082854 | 813..1012 | 100 | <- | Minus |
| arm_3R | 22082947..22083742 | 17..812 | 100 | | Minus |
BO34143.pep Sequence
Translation from 16 to 1123
> BO34143.pep
MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVE
NTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKK
KGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRC
VLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLD
RAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIAL
ATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFS
YGRALQASVLRAWAGKKENIAAGQNELLKRAKANGEAACGNYTAGSVKGF
AGKDTLHVDDHRYASFLDH
BO34143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-PI | 363 | CG6058-PI | 1..363 | 1..363 | 1861 | 100 | Plus |
| Ald-PE | 363 | CG6058-PE | 1..363 | 1..363 | 1861 | 100 | Plus |
| Ald-PJ | 363 | CG6058-PJ | 1..363 | 1..363 | 1760 | 95.3 | Plus |
| Ald-PL | 363 | CG6058-PL | 1..363 | 1..363 | 1760 | 95.3 | Plus |
| Ald-PH | 363 | CG6058-PH | 1..363 | 1..363 | 1760 | 95.3 | Plus |
