Clone BO34147 Report

Search the DGRC for BO34147

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptHsc70-1-RA
Protein status:BO34147.pep: Imported from assembly
Sequenced Size:1957

Clone Sequence Records

BO34147.complete Sequence

1957 bp assembled on 2013-11-09

GenBank Submission: KX799321

> BO34147.complete
GAAGTTATCAGTCGACATGCCCAAATTACCAGCGGTTGGCATTGATCTTG
GTACCACGTACTCGTGTGTCGGTGTCTTTCAGCATGGCAAGGTGGAGATC
ATCGCCAACGACCAGGGCAATCGAACCACGCCCAGCTATGTGGCTTTCAC
GGAGTCGGAGCGTCTGATCGGCGATGCGGCCAAGAACCAGGTGGCCATGA
ATCCCAACAACACGATCTTTGATGCCAAGCGGCTGATTGGCCGCCGTTTC
GACGACGCCACCGTCCAGTCGGACATGAAGCATTGGCCCTTCGAGGTGTT
CGCCGAGAACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGA
AGAGCTTCTATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGA
GAGACCGCGGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTGGTCAC
CGTTCCGGCGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGG
GTGCCATTGCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCG
GCGGCCATAGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGT
CTTGATCTTCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCA
TCGAGGATGGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTC
GGCGGCGAGGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTT
TCAGCGCAAACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGC
GACTCCGAACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACA
CAGGCCAGCATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACAC
CTCGGTGACACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAG
GTACCATGGAACCAGTGGCCAAGGCGTTGCGTGATGCCAAGATGGACAAG
GGCCAGATACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAA
AGTGCAACGTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGT
CCATCAATCCCGATGAGGCGGTTGCCTATGGTGCTGCAGTGCAGGCGGCC
ATCCTCCATGGCGATAAATCGGAGGCAGTGCAGGATCTGCTCCTGCTGGA
TGTCACTCCTCTGTCTCTGGGTATTGAGACTGCTGGCGGAGTGATGACTA
CGCTGATTAAGAGGAACACCACCATACCCACCAAGCAAACGCAAATCTTT
ACCACTTATGCGGACAACCAGCCAGGTGTGCTTATCCAGGTGTTCGAGGG
CGAGCGGGCGATGACGCGAGATAACAACAGCCTGGGTAAGTTTGAACTCT
CGGCAATTCCACCGGCTCCACGCGGAGTGCCCCAGGTGGAGGTAACGTTT
GACATCGATGCCAATGGAATACTCAATGTGACGGCACTGGAGAAGTCGAC
GGGAAAGGAGAACCGTATCACTATCACCAATGACAAGGGCCGTCTCTCCA
AGGAGGACATCGAGCGGATGGTCAATGATGCGGAGGCTTATCGCCAAGCG
GATGAGCAGCAACGCGACCGCATCAATGCCAAGAACCAGCTGGAGTCGTA
CTGTTTCCAGCTGCGCTCCACTCTGGACGATGAGCATCTGAGCAGCCGTT
TTAGCCCCGCGGATCGGGAGACCATCCAGCAGCGGTCCAGTGAAACAATT
GCCTGGTTGGATGCCAATCAACTGGCCGAACGGCAGGAGTTCGAGCACAA
GCAGCAGGAACTGGAGAGAATCTGCAGTCCGATCATCACGAGGTTGTACC
AGGGCGCTGGAATGGCACCACCTCCAACAGCCGGAGGCTCCAATCCAGGA
GCAACTGGCGGCTCGGGTCCAACCATTGAGGAGGTTGATGCAAGCTTTCT
AGACCAT

BO34147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RA 1926 CG8937-PA 1..1923 17..1939 9570 99.8 Plus
Hsc70-1-RD 1668 CG8937-PD 1..1665 275..1939 8280 99.8 Plus
Hsc70-1-RC 1668 CG8937-PC 1..1665 275..1939 8280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RA 2168 CG8937-RA 119..2041 17..1939 9570 99.8 Plus
Hsc70-1-RC 2611 CG8937-RC 766..2484 221..1939 8550 99.8 Plus
Hsc70-1-RD 2543 CG8937-RD 699..2416 222..1939 8545 99.8 Plus
Hsc70-1-RC 2611 CG8937-RC 362..566 17..221 1025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13975916..13977634 221..1939 8550 99.8 Plus
3R 32079331 3R 15244378..15245954 35..1611 2665 77.9 Plus
3R 32079331 3R 11954842..11956279 1470..36 1335 73 Minus
3R 32079331 3R 11958799..11960236 36..1470 1335 73 Plus
3R 32079331 3R 12506045..12507597 36..1585 1265 72.2 Plus
3R 32079331 3R 12509328..12510880 36..1585 1265 72.2 Plus
3R 32079331 3R 12502762..12504314 36..1585 1250 72.2 Plus
3R 32079331 3R 12465995..12467547 1585..36 1235 72.1 Minus
3R 32079331 3R 24055542..24057101 1585..29 1090 71.5 Minus
3L 28110227 3L 13974571..13974775 17..221 1025 100 Plus
3R 32079331 3R 13045581..13046126 187..729 715 75.8 Plus
3R 32079331 3R 13044991..13045131 53..193 330 82.3 Plus
X 23542271 X 11803941..11804118 581..404 275 77 Minus
2R 25286936 2R 14254880..14254977 540..443 235 82.7 Minus
X 23542271 X 11804278..11804430 244..95 220 77.8 Minus
Blast to na_te.dros performed on 2014-11-28 14:32:51 has no hits.

BO34147.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:05 Download gff for BO34147.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RA 119..2041 17..1941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:44 Download gff for BO34147.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RA 119..2041 17..1941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:44 Download gff for BO34147.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13974571..13974775 17..221 100 -> Plus
3L 13975917..13977634 222..1941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:05 Download gff for BO34147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13967671..13967875 17..221 100 -> Plus
arm_3L 13969017..13970734 222..1941 99   Plus

BO34147.pep Sequence

Translation from 16 to 1957

> BO34147.pep
MPKLPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTESERL
IGDAAKNQVAMNPNNTIFDAKRLIGRRFDDATVQSDMKHWPFEVFAENGK
PRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLGGTVTDAVVTVPAYF
NDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKQGTSERNVLIFDL
GGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFQRKHK
KDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRA
RFEELNGDLFRGTMEPVAKALRDAKMDKGQIHDIVLVGGSTRIPKVQRLL
QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEAVQDLLLLDVTPLS
LGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQPGVLIQVFEGERAMT
RDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGILNVTALEKSTGKENR
ITITNDKGRLSKEDIERMVNDAEAYRQADEQQRDRINAKNQLESYCFQLR
STLDDEHLSSRFSPADRETIQQRSSETIAWLDANQLAERQEFEHKQQELE
RICSPIITRLYQGAGMAPPPTAGGSNPGATGGSGPTIEEVDASFLDH

BO34147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-PA 641 CG8937-PA 1..641 1..641 3270 100 Plus
Hsc70-1-PD 555 CG8937-PD 1..555 87..641 2826 100 Plus
Hsc70-1-PC 555 CG8937-PC 1..555 87..641 2826 100 Plus
Hsc70-4-PG 651 CG4264-PG 1..651 1..641 2744 81.1 Plus
Hsc70-4-PB 651 CG4264-PB 1..651 1..641 2744 81.1 Plus