BO34156.complete Sequence
2011 bp assembled on 2013-10-14
> BO34156.complete
GAAGTTATCAGTCGACATGCCAGCAGTCAGTATTTTGGACTTCCGCCGCC
AAGACGTCCACATGGCCATAAAAAAGAGATATGTAAAGCGCCTGTTGCGC
AAGGTGGTCCTCCTCTTGGTGGTCATCGTCACTGTGTCCTTGGTCACCAC
TTTGGTGGTCGAACGGCGAATGAAAAATGCGGCGGAGCTGACGGAACAAC
TCGATCCGAATGGAGATCCCATAACGCCCGTTTTTAGGGCTGCCAATATA
CATCCAACTCGGAAAGCGCCACGACCACCATTTCAGGATCGCAACTCCGT
GGTAGATATCCCGAGAAGTGACAAACTCCAGGGATTCCGACTACCGGAAC
CGAAGGGAGAGCGCAAGGATTGGCACGACTATGCGGCCATGGAGGCGGAT
AGAAAGCGATCCGGTTTCGGTGAGCACGGAGTAGCCGTAAAGATCGAAAA
TCCCGATGAGAAGCAGTTGGAAAAGGAGCACTACGAGATGAACGGCTTTA
ATGGCCTCATATCGGATAGAATCTCCGTCAATCGATCTGTGCCAGACCTC
AGACTCGAGGCTTGCAAGACCCGGAAGTATCTGGCCAAGTTGCCCAATAT
CAGCGTGATTTTCATCTTCTTCAACGAGCACTTTAACACCCTGTTGAGAT
CGATATACAGTGTGATAAATCGCACTCCACCGGAATTACTTAAGCAAATT
GTGCTCGTGGACGATGGCAGCGAGTGGGATGTTCTGAAGCAGCCTTTGGA
CGACTACGTGCAGCAACACTTTCCACATCTGGTGACTATAGTGCGCAATC
CGGAGAGACAAGGTCTAATTGGAGCCAGAATAGCTGGAGCCAAGGTGGCA
GTGGGACAAGTGATGGTGTTCTTTGATTCTCACATAGAAGTCAACTACAA
TTGGCTGCCTCCCCTGATCGAACCCATTGCCATTAATCCCAAGATCTCCA
CCTGTCCCATGGTGGATACTATTTCGCATGAAGATTTCTCTTACTTTAGC
GGAAATAAGGACGGAGCACGTGGTGGATTCGATTGGAAGATGCTGTACAA
ACAGCTTCCGGTTCTGCCCGAAGATGCGCTGGACAAGTCCATGCCGTACC
GGAGTCCCGTGATGATGGGCGGTCTGTTTGCCATCAACACGGACTTCTTT
TGGGATCTGGGCGGCTACGACGACCAGTTGGACATCTGGGGCGGTGAGCA
GTACGAGCTGAGTTTCAAGATCTGGATGTGTGGCGGTATGCTGTTGGATG
TTCCCTGCTCGAGGGTGGCACACATATTCCGGGGACCCATGAAGCCAAGG
GGCAATCCAAGGGGACACAACTTTGTGGCCAAGAACCACAAGCGCGTGGC
AGAGGTTTGGATGGATGAGTACAAGCAATATGTGTACAAACGCGATCCGA
AGACCTATGACAACCTGGATGCCGGAGATCTGACCCGCCAGCGTGGAGTT
CGAGAGCGACTCAAGTGCAAGAGTTTCCACTGGTTCATGACGGAGGTGGC
GCCTGATTTCCTCGTCAAATTCCCGCCCGTGGAACCACCTAGCTACGCCG
CCGGCATCATTCAGAACGTGGCCAACCCGGTCTATTGCCTGGACAACATG
GGCAAGTCCACCGAGGAGGCGGTGGGTATGTTCAGCTGTGCGGACAATAG
GACCCATCCGCAACCGAATCAGTTTTGGGAGCTCTCCATATTCCGAGACC
TCCGGATGAAGGGCTTCGATTCAGTGTGCCTGGATGTGCACGAGGGACCG
CCGAATGCCACCGTTTGGATGTGGAGCTGCCACAGTCAGGGTGGCAATCA
GTTCTGGTACTATGACAGGCAAACCCAAAGGTTGGTTCACGGAGAGAACA
ACAAGCGCTGCCTGGAGGGATTTGTGGAGAACGGCATAGCCAAGGTGGTG
GCCAATTCCTGCGAGAATGGCAACGATCGCCAGCGCTGGGAGTTCGGATT
CGTGAACCACACTATGCTGGACACCTTCTACGATGGATTAAAGGCAAGCT
TTCTAGACCAT
BO34156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant4-RC | 1935 | CG31956-PC | 1..1932 | 62..1993 | 9525 | 99.5 | Plus |
| pgant4-RB | 1935 | CG31956-PB | 1..1932 | 62..1993 | 9525 | 99.5 | Plus |
| pgant6-RC | 2001 | CG2103-PC | 1107..1242 | 1102..1237 | 305 | 81.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant4-RC | 2543 | CG31956-RC | 151..2132 | 12..1993 | 9760 | 99.5 | Plus |
| pgant4-RB | 2411 | CG31956-RB | 19..2000 | 12..1993 | 9760 | 99.5 | Plus |
| pgant6-RC | 2758 | CG2103-RC | 1512..1647 | 1102..1237 | 305 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3474266..3474927 | 1332..1993 | 3295 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3472753..3473302 | 12..561 | 2720 | 99.6 | Plus |
| 2L | 23513712 | 2L | 3473769..3474198 | 904..1333 | 2075 | 98.8 | Plus |
| 2L | 23513712 | 2L | 3473362..3473704 | 562..904 | 1685 | 99.4 | Plus |
| 3L | 28110227 | 3L | 2784270..2784405 | 1102..1237 | 305 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:06:28 has no hits.
BO34156.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 10:15:07 Download gff for
BO34156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant4-RB | 24..2000 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:26 Download gff for
BO34156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant4-RB | 24..2000 | 17..1995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:26 Download gff for
BO34156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3472758..3473302 | 17..561 | 99 | -> | Plus |
| 2L | 3473362..3473704 | 562..904 | 99 | -> | Plus |
| 2L | 3473770..3474198 | 905..1333 | 98 | -> | Plus |
| 2L | 3474268..3474927 | 1334..1995 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 10:15:07 Download gff for
BO34156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3472758..3473302 | 17..561 | 99 | -> | Plus |
| arm_2L | 3473362..3473704 | 562..904 | 99 | -> | Plus |
| arm_2L | 3473770..3474198 | 905..1333 | 98 | -> | Plus |
| arm_2L | 3474268..3474927 | 1334..1995 | 99 | | Plus |
BO34156.pep Sequence
Translation from 16 to 2011
> BO34156.pep
MPAVSILDFRRQDVHMAIKKRYVKRLLRKVVLLLVVIVTVSLVTTLVVER
RMKNAAELTEQLDPNGDPITPVFRAANIHPTRKAPRPPFQDRNSVVDIPR
SDKLQGFRLPEPKGERKDWHDYAAMEADRKRSGFGEHGVAVKIENPDEKQ
LEKEHYEMNGFNGLISDRISVNRSVPDLRLEACKTRKYLAKLPNISVIFI
FFNEHFNTLLRSIYSVINRTPPELLKQIVLVDDGSEWDVLKQPLDDYVQQ
HFPHLVTIVRNPERQGLIGARIAGAKVAVGQVMVFFDSHIEVNYNWLPPL
IEPIAINPKISTCPMVDTISHEDFSYFSGNKDGARGGFDWKMLYKQLPVL
PEDALDKSMPYRSPVMMGGLFAINTDFFWDLGGYDDQLDIWGGEQYELSF
KIWMCGGMLLDVPCSRVAHIFRGPMKPRGNPRGHNFVAKNHKRVAEVWMD
EYKQYVYKRDPKTYDNLDAGDLTRQRGVRERLKCKSFHWFMTEVAPDFLV
KFPPVEPPSYAAGIIQNVANPVYCLDNMGKSTEEAVGMFSCADNRTHPQP
NQFWELSIFRDLRMKGFDSVCLDVHEGPPNATVWMWSCHSQGGNQFWYYD
RQTQRLVHGENNKRCLEGFVENGIAKVVANSCENGNDRQRWEFGFVNHTM
LDTFYDGLKASFLDH
BO34156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant4-PC | 644 | CG31956-PC | 1..644 | 16..659 | 3488 | 100 | Plus |
| pgant4-PB | 644 | CG31956-PB | 1..644 | 16..659 | 3488 | 100 | Plus |
| pgant6-PC | 666 | CG2103-PC | 119..665 | 110..661 | 1631 | 53.3 | Plus |
| pgant6-PB | 666 | CG2103-PB | 119..665 | 110..661 | 1631 | 53.3 | Plus |
| pgant6-PA | 666 | CG2103-PA | 119..665 | 110..661 | 1631 | 53.3 | Plus |
