BO34160.complete Sequence
1048 bp assembled on 2013-05-14
GenBank Submission: KX796079
> BO34160.complete
GAAGTTATCAGTCGACATGCCATACGTCCAAGCTCCGGAGGCGCGGCCAG
TGCCCGATGAGCGCTATCCGGGCAGCCAGCAGGATAGGAAGGATATCGCC
ACCCAGACCGTGCGGAGCAGCAAGCCCAAAGACCTGCGACCGCCTTCGCC
GCCGACGCCGTCCCAGACCCTAAACTCCTCTTCCCTTCCGCCCCCAATGT
CCGACCAGGATGCTGATCCCTCCCTGGATGTGCCCACCGGCGTGGCGATG
CCCTACAACATCGACTGGATATTCCCTAGGCTGAGAAACCCCTCGAAGTT
CTGGTACGTGGTCAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCA
AAGTTGTGCTGATGTTTTTGAATAAACCCCGCGTCTATAACAGGGAGCGA
CTGATCCAGCTGATAACGAAGCGACCCAAGGGCATTCCCCTGGTCACCGT
GTCCAACCACTACTCCTGCTTCGACGATCCTGGGCTGTGGGGCTGCCTTC
CCCTGGGAATTGTCTGCAATACCTATAAAATTCGTTGGTCAATGGCCGCT
CACGACATTTGCTTCACTAACAAGCTGCACTCGCTCTTCTTCATGTTTGG
CAAGTGCATACCTGTTGTGCGTGGCATCGGTGTCTACCAGGATGCCATCA
ACCTGTGCATCGAGAAGGCCGCACTGGGCCATTGGATCCATGTGTTTCCC
GAAGGCAAGGTGAACATGGATAAGGAGGAGCTGCGTCTCAAGTGGGGCGT
GGGTAGGATCATCTACGAGTCGCCGAAGATCCCCATCATTCTGCCCATGT
GGCACGAGGGCATGGACGATCTGTTGCCCAATGTGGAGCCCTATGTGATA
CAGCGTGGTAAGCAGGTGACGCTGAATGTTGGCCAGCCATTGGACCTCAA
CGACTTTATTCTGGACCTAAAAAAACGACAAGTACCGGAGCCAACGGCGC
GGAAGCTCATTACAGACAAAATCCAGGAAGCCTTTCGGGACTTGCGGGCG
GAGACAGAGAAATTGCACAGAGAGCGCAACGCAAGCTTTCTAGACCAT
BO34160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taz-RC | 1017 | CG8766-PC | 1..1014 | 17..1030 | 4980 | 99.4 | Plus |
| Taz-RA | 1137 | CG8766-PA | 123..1134 | 19..1030 | 4970 | 99.4 | Plus |
| Taz-RD | 837 | CG8766-PD | 1..834 | 197..1030 | 4095 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taz-RC | 1174 | CG8766-RC | 67..1081 | 16..1030 | 4985 | 99.4 | Plus |
| Taz-RA | 1776 | CG8766-RA | 479..1490 | 19..1030 | 4970 | 99.4 | Plus |
| Taz-RD | 1323 | CG8766-RD | 103..1113 | 20..1030 | 4965 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12753427..12753817 | 989..599 | 1895 | 99 | Minus |
| 2R | 25286936 | 2R | 12754408..12754751 | 362..19 | 1690 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12753890..12754127 | 600..363 | 1190 | 100 | Minus |
| 2R | 25286936 | 2R | 12753312..12753354 | 1030..988 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:34:43 has no hits.
BO34160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:22 Download gff for
BO34160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RC | 68..1081 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:54 Download gff for
BO34160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RC | 68..1081 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:05 Download gff for
BO34160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RC | 68..1081 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:05 Download gff for
BO34160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12753310..12753353 | 989..1032 | 95 | <- | Minus |
| 2R | 12753428..12753816 | 600..988 | 98 | <- | Minus |
| 2R | 12753891..12754127 | 363..599 | 100 | <- | Minus |
| 2R | 12754408..12754752 | 17..362 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:54 Download gff for
BO34160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8640815..8640858 | 989..1032 | 95 | <- | Minus |
| arm_2R | 8640933..8641321 | 600..988 | 98 | <- | Minus |
| arm_2R | 8641396..8641632 | 363..599 | 100 | <- | Minus |
| arm_2R | 8641913..8642257 | 17..362 | 99 | | Minus |
BO34160.pep Sequence
Translation from 16 to 1048
> BO34160.pep
MPYVQAPEARPVPDERYPGSQQDRKDIATQTVRSSKPKDLRPPSPPTPSQ
TLNSSSLPPPMSDQDADPSLDVPTGVAMPYNIDWIFPRLRNPSKFWYVVS
QFVVSAVGIFSKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYS
CFDDPGLWGCLPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPV
VRGIGVYQDAINLCIEKAALGHWIHVFPEGKVNMDKEELRLKWGVGRIIY
ESPKIPIILPMWHEGMDDLLPNVEPYVIQRGKQVTLNVGQPLDLNDFILD
LKKRQVPEPTARKLITDKIQEAFRDLRAETEKLHRERNASFLDH
BO34160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taz-PC | 338 | CG8766-PC | 1..338 | 1..338 | 1816 | 100 | Plus |
| Taz-PA | 378 | CG8766-PA | 42..378 | 2..338 | 1811 | 100 | Plus |
| Taz-PD | 278 | CG8766-PD | 1..278 | 61..338 | 1496 | 100 | Plus |
| Taz-PB | 278 | CG8766-PB | 1..278 | 61..338 | 1496 | 100 | Plus |
