Clone BO34161 Report

Search the DGRC for BO34161

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptTrax-RB
Protein status:BO34161.pep: Imported from assembly
Sequenced Size:928

Clone Sequence Records

BO34161.complete Sequence

928 bp assembled on 2013-05-14

GenBank Submission: KX796358

> BO34161.complete
GAAGTTATCAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACA
CTGCTCCCAGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGT
CCCATTGTCCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACA
CGATCGCCACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGT
CCAAGCGTATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAAT
AAGGAGAAGGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGC
GGTTAACTTTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACC
AGTTCCGCAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTAC
ACCTACATGGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAAC
CAAGAGCGTTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCG
AGGAGAGCAGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAG
GCTATAGCTCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCC
CACGGAATATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCC
GCTGCATAAATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACC
TGCAAGGCCCTGCAGCATTTCTACAGCGGTTACATCAGTCTAAACTGTCA
GAGAGCCCGTGAACTATGGCGTAAGATCACTACCATGAAGCAGAGCGTTC
TTAAGGCCGAGAATGTTTGCTACAATGTAAAAGTTCGCGGCGGAGAGGCT
GCAAAATGGGGCGCCACTTTTGATCAAAAGCCAGCCGATGAAGTTGACGA
GGGCTTCTACGCAAGCTTTCTAGACCAT

BO34161.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Trax-RB 897 CG5063-PB 1..894 17..910 4470 100 Plus
Trax-RA 777 CG5063-PA 1..713 17..729 3565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Trax-RB 1077 CG5063-RB 134..1027 17..910 4470 100 Plus
Trax-RA 1127 CG5063-RA 134..846 17..729 3565 100 Plus
Trax-RA 1127 CG5063-RA 896..1077 729..910 910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15361825..15362537 17..729 3565 100 Plus
3R 32079331 3R 15362587..15362768 729..910 910 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:35:20 has no hits.

BO34161.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:35 Download gff for BO34161.complete
Subject Subject Range Query Range Percent Splice Strand
Trax-RB 102..995 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:12 Download gff for BO34161.complete
Subject Subject Range Query Range Percent Splice Strand
Trax-RB 134..1027 17..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:19 Download gff for BO34161.complete
Subject Subject Range Query Range Percent Splice Strand
Trax-RB 134..1027 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:19 Download gff for BO34161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15361825..15362537 17..729 100 -> Plus
3R 15362588..15362768 730..912 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:12 Download gff for BO34161.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11187547..11188259 17..729 100 -> Plus
arm_3R 11188310..11188490 730..912 98   Plus

BO34161.pep Sequence

Translation from 16 to 928

> BO34161.pep
MPKNGGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHER
IVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRA
VALELRDQDVYQFRSSYSPGLQEFIEAYTYMEYLCHEDAEGENETKSVSD
WQAIQAVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYIL
GLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISLNCQRAREL
WRKITTMKQSVLKAENVCYNVKVRGGEAAKWGATFDQKPADEVDEGFYAS
FLDH

BO34161.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Trax-PB 298 CG5063-PB 1..298 1..298 1551 100 Plus
Trax-PA 258 CG5063-PA 1..241 1..241 1235 99.2 Plus