BO34163.complete Sequence
937 bp assembled on 2013-05-14
GenBank Submission: KX800098
> BO34163.complete
GAAGTTATCAGTCGACATGTATTCTGGTGATTTAAAGACATCGCTCCGAC
GTTTAGCGAAGTCGGTTACTTTTCTTTGCCGCAACGCTTCGGAATATTCC
TGGAAGAATTCAGGATTCGAGGTACGCTCGGGCGTAGCTTCTGCATGCAG
GCTTCCCAAGTGCCCAACACTCCAGAGGATTCCAACCAATCGTGACGTCA
ATGAGAGGGAGAAACCCTATTCCACATTCAAAATAGAACACGATCGAACA
CGAATCCAGGAAATGTGGCAAAGGTCCAGAATAGGGGCCAGAGAGCAGAA
AAGCCTCCGCGGCTATCAGCCCGCCAATTCTGACGTGAATACCGATTCAA
AGGAAACCATCAATGCCCTGGACAAAGTGAAGCGCATAGAGGAGCGGCGT
AAAATCCAAAACAAGATGCGCGCCCTCATGGAAGAGCAGCACATGAAGGA
CGAGCGAATCCAGGAGGAGAAGGATCGTGTGATCAGGAAGGAGGTTCTCG
TCGAGCGAGATCCGGCCAGGAAGCAAACATTCGCGGAGTACTCTCCTTTC
CGCAACCGAGAGAAGGGCAAACCAGAAACCTGGGTTTCAGCCACCGTTTT
GGCGGCAACGGGAAAAATGCAGCAGCATAGATACATGCAGACTCCTCCGA
AGAAGATGAACCCCCTTAAAGTAGAAGTCGTGGTTCAAAAGCCGAGCCAA
TCAGTTCGAGAGAAATCGGCCACCGGCACCACATCCGGCCAACCCAATCA
TACCCATACCGACATGTCCAGTCGTGCGAAATGGGCCAAGGCCGCCTTGG
AGTTGCACAAGAAGCGCGCCAAAGAAATGGACGATATCCTATCTCTGGGA
GGATACTCCAATGAATCTGCCTGCCTGAAATTGAGTGAACTATCTTCTAT
GCGCAAAGCAAGACGTCACGCAAGCTTTCTAGACCAT
BO34163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hydra-RF | 909 | CG1338-PF | 1..906 | 17..919 | 4450 | 99.7 | Plus |
| hydra-RJ | 909 | CG1338-PJ | 1..906 | 17..919 | 4450 | 99.7 | Plus |
| hydra-RA | 909 | CG1338-PA | 1..906 | 17..919 | 4450 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hydra-RF | 1476 | CG1338-RF | 97..1002 | 17..919 | 4450 | 99.7 | Plus |
| hydra-RJ | 1459 | CG1338-RJ | 80..985 | 17..919 | 4450 | 99.7 | Plus |
| hydra-RA | 1598 | CG1338-RA | 219..1124 | 17..919 | 4450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20671667..20672051 | 678..294 | 1925 | 100 | Minus |
| X | 23542271 | X | 20672120..20672373 | 298..45 | 1270 | 100 | Minus |
| X | 23542271 | X | 20671306..20671548 | 919..677 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:35:24 has no hits.
BO34163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:36 Download gff for
BO34163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hydra-RC | 80..982 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:15 Download gff for
BO34163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hydra-RA | 219..1124 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:21 Download gff for
BO34163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hydra-RA | 219..1124 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:21 Download gff for
BO34163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20671304..20671548 | 677..921 | 99 | <- | Minus |
| X | 20671669..20672046 | 299..676 | 100 | <- | Minus |
| X | 20672120..20672373 | 45..298 | 100 | <- | Minus |
| X | 20672884..20672911 | 17..44 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:15 Download gff for
BO34163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20542331..20542575 | 677..921 | 99 | <- | Minus |
| arm_X | 20542696..20543073 | 299..676 | 100 | <- | Minus |
| arm_X | 20543147..20543400 | 45..298 | 100 | <- | Minus |
| arm_X | 20543911..20543938 | 17..44 | 96 | | Minus |
BO34163.pep Sequence
Translation from 16 to 937
> BO34163.pep
MYSGDLKTSLRRLAKSVTFLCRNASEYSWKNSGFEVRSGVASACRLPKCP
TLQRIPTNRDVNEREKPYSTFKIEHDRTRIQEMWQRSRIGAREQKSLRGY
QPANSDVNTDSKETINALDKVKRIEERRKIQNKMRALMEEQHMKDERIQE
EKDRVIRKEVLVERDPARKQTFAEYSPFRNREKGKPETWVSATVLAATGK
MQQHRYMQTPPKKMNPLKVEVVVQKPSQSVREKSATGTTSGQPNHTHTDM
SSRAKWAKAALELHKKRAKEMDDILSLGGYSNESACLKLSELSSMRKARR
HASFLDH
BO34163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hydra-PF | 302 | CG1338-PF | 1..302 | 1..301 | 1538 | 99.3 | Plus |
| hydra-PJ | 302 | CG1338-PJ | 1..302 | 1..301 | 1538 | 99.3 | Plus |
| hydra-PA | 302 | CG1338-PA | 1..302 | 1..301 | 1538 | 99.3 | Plus |
| hydra-PI | 302 | CG1338-PI | 1..302 | 1..301 | 1534 | 99 | Plus |
| hydra-PH | 302 | CG1338-PH | 1..302 | 1..301 | 1534 | 99 | Plus |
