BO34166.complete Sequence
1246 bp assembled on 2013-05-14
GenBank Submission: KX798087
> BO34166.complete
GAAGTTATCAGTCGACATGTCGCTCGGTGGAGAAAGTAAGCACACGCCAA
AGTCTTCCAATCTGAGGCCGTTGGACGACGACCAGCTGGTTAGGATCATC
AGCACGCCACGTCCGTCAAATGGAGTGAGCCAGCATCCCGCCCAGGACCG
CCTCAAGCGCCTGCAGGGCCAACTAAAGCGGGTGCAGGACAACGAGAAGG
AGCAGGGGACCACCAAGCGGATCACCCACAGTTCCTCCGCATCTCGTCGA
TCAAGTGCGTCCACATCTACGCCCCAGCGACTCCTGAAGTTTCCGCCTAA
GGTGGCGATGAATGCCTGGGAAAAGCCAAAAGCCCTGGTCGATGCCAATC
GCCTGAAGGCGGGACGTACCCAAACTGCCTACCAGCGTCTCATGCTGTTA
AGAGCTTCGCTGCAGCAGAAGCAGCTATATGAGGAGCGCAACAACAATAT
TGTGGCCAAGATCAACGAAGAGGTGATAGAAAAACAACCAGAAGCCTGCA
ACATCACAAATCCAAGTGCATTTGATGGCTCGACGGCCAGCGATATGGAG
GTCGAGCCCATGGAATGGCAGGAGTCTATTGAAGAGGAGGCGGCACAGAA
TGATCAGGATGAGGCTAAGAAAGGGGACGACACTCTATTGATGCTGCCGG
CGGAGTCCATTGAAGAGGAGGCGCCACAGAAAGGTCAGGATGAGGCTAAG
GAAGAGGACGACACTATATTGATGCTGCAGGCGGCCGATGCCGAGGAGCT
GCCCCCAAGGCTTGAGGATTACATGTACTTTGTGCTGGACACCAACGTCC
TCATACACAACCACAAGTTCGTGGAGAGACTGACCGATGTGGTGCTGCCG
GGCACGGTGGGCAGCATGCTGTACCTTCCGTACATAGTAATCAAAGAGCT
GGACAAGCTAAAGAGCAAGTACCAGTCGGACTGCCTGCAGCGTGTGATTG
CCATGCGAGCAATACGCTTTTTGAACACCAAGTTCGACGAAAGCTTTCAA
ATACAAGCTCAATCCGCTTTGGAGGAGGCGGATCACCTGATCAAGATCGA
CTGCCCGGATGACAGCATTTTGAATTGCTGCCTGCAGCTGCAGGCGCAGG
TTCCCCACATGATCCTGCTCACCAACGACGCGAACCTTCGGCTCAAGGCC
AATGCCTCCAACATTCAGGTCTCCTGTCGCTCTGATCTGATGTCCACCTA
TGTGGATGAGTTCGCTGGCTTCGGCGATGCAAGCTTTCTAGACCAT
BO34166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7206-RB | 1215 | CG7206-PB | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| CG7206-RC | 474 | CG7206-PC | 1..361 | 17..377 | 1805 | 100 | Plus |
| CG7206-RB | 1215 | CG7206-PB | 555..637 | 652..734 | 295 | 90.4 | Plus |
| CG7206-RB | 1215 | CG7206-PB | 636..718 | 571..653 | 295 | 90.4 | Plus |
| CG7206-RC | 474 | CG7206-PC | 419..474 | 377..432 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7206-RB | 1585 | CG7206-RB | 88..1299 | 17..1228 | 6060 | 100 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 506..1357 | 377..1228 | 4260 | 100 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 88..448 | 17..377 | 1805 | 100 | Plus |
| CG7206-RB | 1585 | CG7206-RB | 642..724 | 652..734 | 295 | 90.4 | Plus |
| CG7206-RB | 1585 | CG7206-RB | 723..805 | 571..653 | 295 | 90.4 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 700..782 | 652..734 | 295 | 90.4 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 781..863 | 571..653 | 295 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18089295..18089925 | 1007..377 | 3155 | 100 | Minus |
| X | 23542271 | X | 18089983..18090238 | 377..122 | 1280 | 100 | Minus |
| X | 23542271 | X | 18089011..18089233 | 1228..1006 | 1115 | 100 | Minus |
| X | 23542271 | X | 18090316..18090422 | 123..17 | 535 | 100 | Minus |
| X | 23542271 | X | 18089568..18089650 | 653..571 | 295 | 90.4 | Minus |
| X | 23542271 | X | 18089649..18089731 | 734..652 | 295 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:35:28 has no hits.
BO34166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:38 Download gff for
BO34166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7206-RB | 57..1268 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:18 Download gff for
BO34166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7206-RB | 88..1299 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:24 Download gff for
BO34166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7206-RB | 88..1299 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:24 Download gff for
BO34166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18089009..18089231 | 1008..1230 | 99 | <- | Minus |
| X | 18089295..18089924 | 378..1007 | 100 | <- | Minus |
| X | 18089983..18090237 | 123..377 | 100 | <- | Minus |
| X | 18090317..18090422 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:18 Download gff for
BO34166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17983042..17983264 | 1008..1230 | 99 | <- | Minus |
| arm_X | 17983328..17983957 | 378..1007 | 100 | <- | Minus |
| arm_X | 17984016..17984270 | 123..377 | 100 | <- | Minus |
| arm_X | 17984350..17984455 | 17..122 | 100 | | Minus |
BO34166.pep Sequence
Translation from 16 to 1246
> BO34166.pep
MSLGGESKHTPKSSNLRPLDDDQLVRIISTPRPSNGVSQHPAQDRLKRLQ
GQLKRVQDNEKEQGTTKRITHSSSASRRSSASTSTPQRLLKFPPKVAMNA
WEKPKALVDANRLKAGRTQTAYQRLMLLRASLQQKQLYEERNNNIVAKIN
EEVIEKQPEACNITNPSAFDGSTASDMEVEPMEWQESIEEEAAQNDQDEA
KKGDDTLLMLPAESIEEEAPQKGQDEAKEEDDTILMLQAADAEELPPRLE
DYMYFVLDTNVLIHNHKFVERLTDVVLPGTVGSMLYLPYIVIKELDKLKS
KYQSDCLQRVIAMRAIRFLNTKFDESFQIQAQSALEEADHLIKIDCPDDS
ILNCCLQLQAQVPHMILLTNDANLRLKANASNIQVSCRSDLMSTYVDEFA
GFGDASFLDH
BO34166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7206-PB | 404 | CG7206-PB | 1..404 | 1..404 | 2058 | 100 | Plus |
| CG7206-PC | 157 | CG7206-PC | 1..120 | 1..120 | 609 | 100 | Plus |
