BO34168.complete Sequence
1915 bp assembled on 2013-09-16
GenBank Submission: KX795119
> BO34168.complete
GAAGTTATCAGTCGACATGAACAACAACAGCTTATTACGTTATCAAAACT
CAAAACTCATCGAGAGTGTTATGAACATACTAAATCCAGGCAAATTCAAG
TGTATCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTAT
CTGCGACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACC
AGGAGCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTG
ATCATGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGC
TCTGCCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTC
AGGCTGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAG
GAGGAAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGA
TTCGGAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCA
GCGATGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTC
TTCCTCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCAT
GTACGCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAAC
ATATACCCGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCC
TCCAATTCGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCAT
GTCTGCATCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCT
ACAACTTTGCCACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCC
GCCAATATGCCCGTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAA
CGTGTTGATTTCTCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCT
CCAACGACTGTTACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGC
GTGGATCGCCTCCAGGTTAAGGGTGACCTGCCCACGGCTCAGTACGGACC
GGGAATAGTGATCCACAAGCACTTCCTCTACACAATCGGCGGAACGACGG
GATTTGATTACACTTGTGATGTTTATCGTTTAGATTTGCGCACCGGTATA
TGGGAGAATGTGTACATAAGTCGTCCGGAGATGCGAGACGACCCGGAAGG
GCGCTACCGTCACGAGGTCGTTTATGATGGCAAGCACATCTTTGTACTGG
GCGGCGGCACATCGCACTCTGTATACGATTTGCAGCGCATTCCGGCTTAC
AACCTGGAGGCGAACTGCTGGGATTACTTTGAAACGTATCCCGATCAGCG
TGCAGCTGATGCGGACGACGGCAACAGAGGCTATCCAAAGCCGCGCAAGT
GCTTTTCCTGTGTGCAGCACCAGTCCTCCACTGGGGACATCGAGGCTTTC
ATCACGGGCGGTCTGCAAGGCGACTTCTCCACATATTTTTCGGACATCTG
GAAGCTTAATCTGCGCACTAAGCATTGGTATCGCATCGAGACCGCCATCC
TGCCCCGCCCCCTTTACTTCCACTCGGCGGCCCACTCCGATAATGGATGC
ATGTACGTATTCGGAGGCATCGAGTACATTGACAAGGAGATGCGCCGCCG
CAACGATCTGTATAAGATGTGGATGACAGTGCCCAAACTGAGCGAAATGT
GCTGGGACGCCATCACATACTATAACGACAATCTTGATTTGTACGACCGA
AAAACGCTACTGGAAGCCGGTATACCGAAACGTTTTACGGAACGCCTGCC
GCCGCAGCGCAGGAGGCGTTTGGACACGAGCCAGCCAGACCCGTCCATGC
TAATTTCGCTGTACTCGAACCCGAAACGTGCCCGCTCCTCGACGCAAGCA
AGCTTTCTAGACCAT
BO34168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 1830 | CG5186-PC | 1..1827 | 71..1897 | 9090 | 99.8 | Plus |
| slim-RA | 1830 | CG5186-PA | 1..1827 | 71..1897 | 9090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 2510 | CG5186-RC | 474..2336 | 35..1897 | 9270 | 99.8 | Plus |
| slim-RA | 3081 | CG5186-RA | 474..2336 | 35..1897 | 9270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18441438..18442313 | 35..910 | 4380 | 100 | Plus |
| 2R | 25286936 | 2R | 18443655..18444213 | 911..1469 | 2750 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18444348..18444781 | 1464..1897 | 2155 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 13:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 215..243 | 118 | 89.7 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 215..243 | 118 | 89.7 | Plus |
BO34168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:59 Download gff for
BO34168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 316..333 | 17..34 | 100 | -> | Plus |
| slim-RA | 474..2336 | 35..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:52 Download gff for
BO34168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 316..333 | 17..34 | 100 | -> | Plus |
| slim-RA | 474..2336 | 35..1899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:52 Download gff for
BO34168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18441280..18441297 | 17..34 | 100 | -> | Plus |
| 2R | 18441438..18442313 | 35..910 | 100 | -> | Plus |
| 2R | 18443655..18444212 | 911..1468 | 99 | -> | Plus |
| 2R | 18444353..18444781 | 1469..1899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:59 Download gff for
BO34168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14328785..14328802 | 17..34 | 100 | -> | Plus |
| arm_2R | 14328943..14329818 | 35..910 | 100 | -> | Plus |
| arm_2R | 14331160..14331717 | 911..1468 | 99 | -> | Plus |
| arm_2R | 14331858..14332286 | 1469..1899 | 99 | | Plus |
BO34168.pep Sequence
Translation from 16 to 1915
> BO34168.pep
MNNNSLLRYQNSKLIESVMNILNPGKFKCIVFDQLRHTWTFLLFICDFLA
KIYRTPRITAHQEQLANHNNNNNNNNDLIMEQDMPEEEVGQPEEALPQQD
NGEVVDRFNAIQAAVELMDAASDLDEEEEEEDDDVDVDVDYGDTDSESEF
EEMYSDEWTSSSDELDEGTELSKSVLNVFLSSDKQQSQMAGQIPMYAFQP
LRLVKCQYRDKHIPGGFPLARSGHRIIASNSHLYSLGGYNPRSAMSASRH
GRCLLFQELWSYNFATRTWRLELNAGNAANMPVELASNALTIHNNVLISH
GGTGYPFGVSCSNDCYVYRTASAGATPGVDRLQVKGDLPTAQYGPGIVIH
KHFLYTIGGTTGFDYTCDVYRLDLRTGIWENVYISRPEMRDDPEGRYRHE
VVYDGKHIFVLGGGTSHSVYDLQRIPAYNLEANCWDYFETYPDQRAADAD
DGNRGYPKPRKCFSCVQHQSSTGDIEAFITGGLQGDFSTYFSDIWKLNLR
TKHWYRIETAILPRPLYFHSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYK
MWMTVPKLSEMCWDAITYYNDNLDLYDRKTLLEAGIPKRFTERLPPQRRR
RLDTSQPDPSMLISLYSNPKRARSSTQASFLDH
BO34168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-PC | 609 | CG5186-PC | 1..609 | 19..627 | 3295 | 100 | Plus |
| slim-PA | 609 | CG5186-PA | 1..609 | 19..627 | 3295 | 100 | Plus |
