BO34170.complete Sequence
1444 bp assembled on 2013-09-16
GenBank Submission: KX794521
> BO34170.complete
GAAGTTATCAGTCGACATGGTTTCCAAAAAGAGGAAAAATTCTGATGAAA
ATAAGAAGAAGGTAGAAACCACATTTGAGTCCGATCCATATGAGATTAAA
TTTCCATTGCCGGAGCAACTCGATCCGTCCCAATGCCGCGATGAATTCAT
CGGCACATTCATCCGGGAGCACGAACTTCGGGCCAGTTCCCTGCGGCCCA
GATCCACATTCCGGGCCGCTTCGGAATTCAGGTCATCACAGGACCTCTCG
GATCAGGGGCCCGAAAAGGGGGCAGAGGCTATGGTGGTGCGACAGTTGGT
GAGTCAGCGCAAAAGGTTAAGTCTGCGGAAGACGAAGGAAGAGATCTTGG
AGAACATTAAGTTGCGGTCGACCATGATGAATGACCTGAACCTGAAATGC
CAGAAGGCGGCCATAGAATTCCTGTCGGTTCGCCTGCTAAAGCAGTTGCG
CCTCTTTTCGAGTCCCTGGCCTGGTGACACTGGGGATATCCCTTACAACC
TGTTCAGCTGGTCGATGGACGACTTCCTGATGCGCTTGGCAATTAAGCAG
GTCTATCTAGACGTCATCCATCGGGAGAGAAGTGCGGAGGATCTGGACTG
CCTCAAGTTCTGCAAGGACCTGGGTCAGATCGAACTTCTTATCTACGAGA
TCAGAGAAGACTATCGCAACGATAGGGATCTATGTCAGGGGAGCATGGAG
TTGTTAAGAAGTGCCCAATACAACATTAACGCACCTTGGGTCAGTACCCT
CAAAGATAATCTTGAGAGCATTAGATCCAGTACGTTAACCGCTAGGCTTT
TTGCTCAAAGTAGCGCCTTTAACATAGTATTACGTCACTCATCGGCAATG
GGAGCCTTCGAAGACGAGTCAGCCCAGGATCCGATTGAAATGCGGTACCA
AATCAACTGGATTAGAAGCTGTACGGATCAGCGTCTCTATCGGATAAACG
GAAGGGAGGAGAAGATGAGAAAGGAACTAAATGACCTGGAGGTACAAGCA
TTGCAGGATGAAAAGGTGCGCAATTCCTCCGAGCTTATATACTCGCTAGA
GGTGGGAAAGCTTAGGGAAAGCGTCAGAGTGTGGCAGGAGCGACTTGATA
CCGATTTGGAGAACGCCGAAGTCACGTGTACCGTATCCAAGCTTGCACTG
CAAAAGGTCAAGGACGATATTAAGTTCTATAAAGAACAGAAGGACATGTA
TCTCCAGCGAATCGAAGAAGTGCAGGCTATAATTGCTCAGGAACAGGGGG
TATTTGGTTCCACGCGAAGCCGATTGTCCAGGAAGTCGGTTCGAAATTCC
GAGAGAAAGTCCGAAAGGATGTCGGAAAAAAAATCAGAGAGGAATTCCGA
AAATAAGATAGGACGAAAATCTGAAAGGCTTTCTGAGAGACGGTCTGAAA
GAAAGTCCCGAAATTCCAAAATGCCAGCAAGCTTTCTAGACCAT
BO34170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst36Fb-RB | 1413 | CG42626-PB | 1..1410 | 17..1426 | 7020 | 99.9 | Plus |
| Mst36Fa-RC | 1497 | CG31801-PC | 387..1230 | 400..1243 | 1130 | 75.6 | Plus |
| CG43339-RC | 1221 | CG43339-PC | 303..558 | 355..610 | 365 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst36Fb-RB | 1558 | CG42626-RB | 62..1471 | 17..1426 | 7020 | 99.9 | Plus |
| Mst36Fa-RC | 1643 | CG31801-RC | 453..1296 | 400..1243 | 1130 | 75.6 | Plus |
| CG43339-RC | 1469 | CG43339-RC | 373..628 | 355..610 | 365 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18674342..18675033 | 708..17 | 3430 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18673681..18674063 | 1252..870 | 1915 | 100 | Minus |
| 2L | 23513712 | 2L | 18673450..18673627 | 1426..1249 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 18674114..18674279 | 872..707 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 18675587..18675960 | 1243..870 | 805 | 81 | Minus |
| 2L | 23513712 | 2L | 18676291..18676546 | 655..400 | 395 | 77 | Minus |
| 2L | 23513712 | 2L | 18672658..18672913 | 610..355 | 365 | 76.2 | Minus |
| 2L | 23513712 | 2L | 18673092..18673185 | 176..83 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:46:19 has no hits.
BO34170.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:51 Download gff for
BO34170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst36Fb-RB | 62..1471 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:45 Download gff for
BO34170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst36Fb-RB | 62..1471 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:45 Download gff for
BO34170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18673448..18673626 | 1250..1428 | 98 | <- | Minus |
| 2L | 18673684..18674060 | 873..1249 | 100 | <- | Minus |
| 2L | 18674114..18674277 | 709..872 | 100 | <- | Minus |
| 2L | 18674342..18675033 | 17..708 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:51 Download gff for
BO34170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18673448..18673626 | 1250..1428 | 98 | <- | Minus |
| arm_2L | 18673684..18674060 | 873..1249 | 100 | <- | Minus |
| arm_2L | 18674114..18674277 | 709..872 | 100 | <- | Minus |
| arm_2L | 18674342..18675033 | 17..708 | 99 | | Minus |
BO34170.pep Sequence
Translation from 16 to 1444
> BO34170.pep
MVSKKRKNSDENKKKVETTFESDPYEIKFPLPEQLDPSQCRDEFIGTFIR
EHELRASSLRPRSTFRAASEFRSSQDLSDQGPEKGAEAMVVRQLVSQRKR
LSLRKTKEEILENIKLRSTMMNDLNLKCQKAAIEFLSVRLLKQLRLFSSP
WPGDTGDIPYNLFSWSMDDFLMRLAIKQVYLDVIHRERSAEDLDCLKFCK
DLGQIELLIYEIREDYRNDRDLCQGSMELLRSAQYNINAPWVSTLKDNLE
SIRSSTLTARLFAQSSAFNIVLRHSSAMGAFEDESAQDPIEMRYQINWIR
SCTDQRLYRINGREEKMRKELNDLEVQALQDEKVRNSSELIYSLEVGKLR
ESVRVWQERLDTDLENAEVTCTVSKLALQKVKDDIKFYKEQKDMYLQRIE
EVQAIIAQEQGVFGSTRSRLSRKSVRNSERKSERMSEKKSERNSENKIGR
KSERLSERRSERKSRNSKMPASFLDH
BO34170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst36Fb-PB | 470 | CG42626-PB | 1..470 | 1..470 | 2374 | 100 | Plus |
| Mst36Fa-PC | 498 | CG31801-PC | 25..485 | 23..471 | 1309 | 58.4 | Plus |
| CG43339-PC | 406 | CG43339-PC | 9..393 | 21..406 | 1056 | 53.4 | Plus |
| CG43339-PB | 406 | CG43339-PB | 9..393 | 21..406 | 1056 | 53.4 | Plus |
| CG33322-PA | 485 | CG33322-PA | 38..485 | 29..461 | 261 | 25 | Plus |
