Clone BO34171 Report

Search the DGRC for BO34171

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptSyn2-RE
Protein status:BO34171.pep: Imported from assembly
Sequenced Size:1591

Clone Sequence Records

BO34171.complete Sequence

1591 bp assembled on 2013-05-14

GenBank Submission: KX798550

> BO34171.complete
GAAGTTATCAGTCGACATGATTTCAGGAATTATGAAGCTCTCTGACACCA
TGGCCACGCCTATAGAAGAAAAACTCGACCAAAACCTGAAGGTGCGAACT
GGTATGGTGCACGTGAGCGATGGCAAGAGCAGACCAGAACCCCTTCGACT
TAATCTTACCATGGAGTTGCTTTCGCTCCAGAAGCTGGAAGTGGTAACAC
CAAGTAGTTGTCACCCCAATGGACCACCCATGGAATCAAAGGAACGTATG
GTTCAAATTACGCGCCAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGG
TGGCGCCGAGCATAAACTACCCATTTTGATATCGCGTATCTATAAGGATC
AGGCTGCGGACATAACGGGCCAACTATTTGTTGGCGATGCCATCATCAAG
GTCAACGGAGAATACATCACGGCATGTCCTCACGATGATGCTGTCAATAT
ATTGAGAAACGCTGGCGATATTGTTGTACTCACTGTTAAGCATTATCGCG
CAGCCACGCCTTTCCTTCAGAAACAACTGACCAAGGACACGCCCGACTCG
GACAACGATGTCACATGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTC
ATCCGTCAATAGTGGAACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAA
TTTGCTCGGAGCCCGAGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTA
ATGATGGCATATGTGACGAGGTACATCTATGGCACCGACAAGCTGCGACA
AAATGCCTTCGAAGTTCGCGGTCTGAATGGAATTTCCACAGGTGTCATAC
ACTGTGACGAACTGGCCATACTTAGTCAGTGGCTGAAATTGATAACGGAC
AATGTTGTGGGCCTAACGCATTTACAGATGAAGCTATATAATAGAAACTT
TGCTGTGGGCGAGCGCATTGAGTACATGGGCTGGGTGAATGAAGGTGTCA
TTAACAACAATATATCGTGGCAGAGCTACAAGCCCAGGTTTCTACTGCTC
AAAGGCACTGAAGTGATGCTCTTTGAAACGCCACCACTAAATGTGGCTGG
CATTAGTAAGGCTTTGGTGGTCTACAAGGTGTACCAGACCATGTTCCGCA
TTGTCAAGGAATCGGAGACCGTGGATAGTCGTCAGCATTGTTTCCTGCTG
CAAAGTTCGGGTCATGAACCGCGCTATTTGAGCGTGGAAACCCGTCAGGA
GCTTTTGAGAATCGAAAACAGCTGGAATGCGGCCATTGTGACAAGTGTCA
TCAAACTGGGCCGTAAGACCTTTGCCGTGTCGCATCATGGAAAAAGTGGT
GGACTCACGCTGGACTGGCAAGCTGGTTTTTCATTAACCGAAGGAGCCGA
ATCCGCCACAGTTTGGCAGTATAAATTCTCCCAGCTGAGGGGCTCCAGTG
ATGATGGTAAATCGAAGCTGAAGTTGCATTTCCAGGATCACGATAGCCGT
GCAATAGAAACCAAGGAGCTGGAATGCCAAGTCCTGCAAAGTCTGCTGTT
CTGCATGCACGCGTTTCTTACGGCCAAGGTGGCATCGGTGGATCCAGCAT
TTTTGAGCTCAATCCAGCAGACTGCAAGCTTTCTAGACCAT

BO34171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-RE 1560 CG4905-PE 1..1557 17..1573 7650 99.4 Plus
Syn2-RB 1545 CG4905-PB 1..1542 32..1573 7575 99.4 Plus
Syn2-RA 1545 CG4905-PA 1..1542 32..1573 7575 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-RE 1888 CG4905-RE 32..1588 17..1573 7650 99.4 Plus
Syn2-RA 3671 CG4905-RA 363..1911 25..1573 7610 99.4 Plus
Syn2-RB 3475 CG4905-RB 169..1715 27..1573 7600 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16554966..16555253 240..527 1410 99.3 Plus
2R 25286936 2R 16556069..16556293 1037..1261 1110 99.6 Plus
2R 25286936 2R 16556353..16556557 1262..1466 1025 100 Plus
2R 25286936 2R 16555599..16555789 687..877 910 98.4 Plus
2R 25286936 2R 16555319..16555483 528..692 810 99.4 Plus
2R 25286936 2R 16555843..16556003 876..1036 805 100 Plus
2R 25286936 2R 16554757..16554909 90..242 720 98 Plus
2R 25286936 2R 16556617..16556726 1464..1573 550 100 Plus
2R 25286936 2R 16554618..16554694 17..93 385 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:35:11 has no hits.

BO34171.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:32 Download gff for BO34171.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RE 28..1584 17..1575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:08 Download gff for BO34171.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RE 32..1588 17..1575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:17 Download gff for BO34171.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RE 32..1588 17..1575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:17 Download gff for BO34171.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16555845..16556003 878..1036 100 -> Plus
2R 16556069..16556293 1037..1261 99 -> Plus
2R 16556353..16556556 1262..1465 100 -> Plus
2R 16556619..16556726 1466..1575 98   Plus
2R 16554618..16554692 17..91 100 -> Plus
2R 16554759..16554908 92..241 98 -> Plus
2R 16554968..16555253 242..527 99 -> Plus
2R 16555319..16555483 528..692 99 -> Plus
2R 16555605..16555789 693..877 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:08 Download gff for BO34171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12442824..12442988 528..692 99 -> Plus
arm_2R 12443110..12443294 693..877 98 -> Plus
arm_2R 12442123..12442197 17..91 100 -> Plus
arm_2R 12442264..12442413 92..241 98 -> Plus
arm_2R 12442473..12442758 242..527 99 -> Plus
arm_2R 12443350..12443508 878..1036 100 -> Plus
arm_2R 12443574..12443798 1037..1261 99 -> Plus
arm_2R 12443858..12444061 1262..1465 100 -> Plus
arm_2R 12444124..12444231 1466..1575 98   Plus

BO34171.pep Sequence

Translation from 16 to 1591

> BO34171.pep
MISGIMKLSDTMATPIEEKLDQNLKVRTGMVHVSDGKSRPEPLRLNLTME
LLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGGLGLSIKGGAEHK
LPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAG
DIVVLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSG
TISRSCSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEV
RGLNGISTGVIHCDELAILSQWLKLITDNVVGLTHLQMKLYNRNFAVGER
IEYMGWVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVAGISKAL
VVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIE
NSWNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVW
QYKFSQLRGSSDDGKSKLKLHFQDHDSRAIETKELECQVLQSLLFCMHAF
LTAKVASVDPAFLSSIQQTASFLDH

BO34171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-PE 519 CG4905-PE 1..519 1..519 2676 100 Plus
Syn2-PB 514 CG4905-PB 1..514 6..519 2653 100 Plus
Syn2-PA 514 CG4905-PA 1..514 6..519 2653 100 Plus
Syn2-PC 459 CG4905-PC 166..459 226..519 1517 99.7 Plus
Syn2-PC 459 CG4905-PC 1..166 6..171 846 100 Plus
Syn1-PE 624 CG7152-PE 159..623 74..508 310 23.7 Plus