Clone BO34172 Report

Search the DGRC for BO34172

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG12923-RA
Protein status:BO34172.pep: Imported from assembly
Sequenced Size:1003

Clone Sequence Records

BO34172.complete Sequence

1003 bp assembled on 2013-05-14

GenBank Submission: KX793752

> BO34172.complete
GAAGTTATCAGTCGACATGGAGTTTCTGGACCCAAAGATCCACAGCGCCG
ACAAGTTGTGCGACCAATTCGAAGAGTATAAAAAGAAGCGTGAGGAAGCG
CACTTGGAGCTGAAGAACAAGGTGAACACCATGTTCAATTTGAAAGCGGA
TATCAAGGAGCTCAACGAAAATATGGAAACACTTCGCATTGGAATGCAAC
AGCTGGATGACCAGCAGAAGGTTCAGCTGCATCAGGGAAAGCTAATGTCT
CAGTCGATGTTCGGTACCATTGAGGCTGCTCCTCCAGATGAAGGACAAGT
CCCTTTGAAGGACGAAGATACCATACCCAACAAGCTCTTGATAAAGTCCG
AGGTAAAAAAATGTCTCTTTGAGGGCTGCCAAAGGCGAATAGACAGCCAG
TTGCTTTTGCTGCACTACCTATGTGATCATGAGAACAAGGAAGCTTCCTT
TCAGCGCTTTCTTCCCGTAGTGAAACATGAACGGGCTGTGCTTTCTTTTA
AGCCGACGAGCTGTAAGAATCCTGATAATCAGGTGTTGGGACTCCTGGCT
TACAATGCACAACAGTTATTGATATCCCAGCGGCAATGTGAGCCCTATAA
CAGCTTCCCGCTGAACCAACACTCGCACCTGGATAGTCACATCCCGTTGG
TGGTGCTAATTTCCCAGACATTGCCCAATACGGCTCTGCGGAATAGGCGT
TCACCAGATAGCCACAGAAACAGTGAGTTCGTCCTCTGGCTGGTTACACC
CAGCGACGGACTGCAGTTGAACGTTACGCTCAGTCTCTATGGAAGAGATG
TTGCACTAAGAACCAGCTGTGTTTTAGGTGTTCGAAAGGTTAATAATAAC
CGGGACGCGGACTATTACATGGCAGTCGACGAAAGTTACTGGCGTCTGAC
GTACGCCGAAGTGGAGAAACTCTCAAACAACTTTCGTGACGAACTCCACC
TGGAGGTTGTAGTTACTGAGTCCGAGGGAAACGTGGCAAGCTTTCTAGAC
CAT

BO34172.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12923-RB 972 CG12923-PB 1..969 17..985 4845 100 Plus
CG12923-RA 972 CG12923-PA 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12923-RB 1838 CG12923-RB 103..1071 17..985 4845 100 Plus
CG12923-RA 1234 CG12923-RA 103..1071 17..985 4845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9887750..9888718 17..985 4845 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:35:16 has no hits.

BO34172.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:33 Download gff for BO34172.complete
Subject Subject Range Query Range Percent Splice Strand
CG12923-RA 103..1071 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:10 Download gff for BO34172.complete
Subject Subject Range Query Range Percent Splice Strand
CG12923-RA 103..1071 17..987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:18 Download gff for BO34172.complete
Subject Subject Range Query Range Percent Splice Strand
CG12923-RA 103..1071 17..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:18 Download gff for BO34172.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9887750..9888718 17..987 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:10 Download gff for BO34172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5775255..5776223 17..987 99   Plus

BO34172.pep Sequence

Translation from 16 to 1003

> BO34172.pep
MEFLDPKIHSADKLCDQFEEYKKKREEAHLELKNKVNTMFNLKADIKELN
ENMETLRIGMQQLDDQQKVQLHQGKLMSQSMFGTIEAAPPDEGQVPLKDE
DTIPNKLLIKSEVKKCLFEGCQRRIDSQLLLLHYLCDHENKEASFQRFLP
VVKHERAVLSFKPTSCKNPDNQVLGLLAYNAQQLLISQRQCEPYNSFPLN
QHSHLDSHIPLVVLISQTLPNTALRNRRSPDSHRNSEFVLWLVTPSDGLQ
LNVTLSLYGRDVALRTSCVLGVRKVNNNRDADYYMAVDESYWRLTYAEVE
KLSNNFRDELHLEVVVTESEGNVASFLDH

BO34172.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12923-PB 323 CG12923-PB 1..323 1..323 1684 100 Plus
CG12923-PA 323 CG12923-PA 1..323 1..323 1684 100 Plus
CG11227-PA 753 CG11227-PA 473..748 47..318 157 20.9 Plus
CG11227-PB 764 CG11227-PB 484..759 47..318 157 20.9 Plus