Clone BO34191 Report

Search the DGRC for BO34191

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:341
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptLIMK1-RD
Protein status:BO34191.pep: Imported from assembly
Sequenced Size:3190

Clone Sequence Records

BO34191.complete Sequence

3190 bp assembled on 2013-10-22

GenBank Submission: KX799876

> BO34191.complete
GAAGTTATCAGTCGACATGTCTTTTTGGTTACATTTTGTACTGAAAAAAA
TTTTACCATGGCTCAAATCTACGAAAATTGATGTGAATCTTACAAATCTG
CATATTGGAGATAGGATATTGGAGGTGAACGGCACACCAGTTAGTGATTC
GTCCGTGGAACAGATCGACAAATTGATACGGAGTAATGAGAAGATGCTTC
AGCTGACCGTGGAGCATGATCCGGTGCAAGTGTGCCGCTCCTGCAGCCAA
GCGGACATCCAGCGGGCCATGTCAGCGTCCACGTTAATCCTGCCGCTCAG
CACATCGGCCTCCAGTGTCGAGGTGGGCAGGGAGCGTCTGTACAAGACAC
CCGGCGAACAGGGCACGAAGGCCAGGAAACTGCGACAAGCCACCAATGCC
TCTACGACAATACCACCGGCAGCTGGAGCCACCGCAATGACGCAACTAAA
GGAGAAGGAGCGTTGTTCCAGTCTGTCCAAGTTGCTGGATGAACAGCATC
AGGCACAACAGCATTCGGCGCATCCTCAGCTCTATGATCTGTCCAGGACG
CAATCCTGCCGTGTCGTCCAAAAGCCACAACGAATCTTTCGTGCAACTGA
TCTGGTTATAGGAGAGAAGCTAGGCGAGGGCTTCTTTGGCAAGGTTTTCA
AGGTGACCCACCGTCAGAGCGGCGAGGTGATGGTCCTCAAAGAACTGCAT
CGTGCGGATGAGGAAGCGCAAAGGAATTTCATCAAGGAAGTGGCCGTTCT
CCGTTTGCTGGACCATCGGCATGTGCTCAAATTCATTGGTGTTCTGTACA
AGGATAAGAAACTGCACATGGTCACGGAGTACGTGGCCGGTGGTTGTCTC
AAGGAGCTGATCCACGATCCAGCCCAAGTACTCCCTTGGCCCCAGCGCGT
CCGCTTGGCCAGGGATATTGCGTGCGGCATGAGCTATCTGCACTCGATGA
ACATCATCCATCGCGATTTGAACTCAATGAATTGCCTGGTCCGTGAAGAT
CGCTCGGTCATAGTGGCGGATTTTGGACTAGCTCGCAGTGTGGATGCGCC
GCGGCTGCCAAGTGGCAATATGACGCCAGGCGGCTATGGATCAGGCGCTA
ACAGCGATGCGCCCATGTCACCGAGTGGAACACTAAGGCGCAGCAAGAGC
AGGCAGCGAAGGCAACGTTACACGGTGGTCGGGAATCCCTACTGGATGGC
ACCCGAGATGATGAAAGGTCTCAAATACGACGAAAAGGTGGATGTCTTCT
CCTTTGGCATTATGTTGTGTGAGATCATTGGACGCGTGGAAGCCGATCCG
GATTTTATGCCTCGCAATTCGGACTTCAGTCTCAATCAGCAGGAGTTTCG
CGAGAAGTTCTGCGCTCAGTGTCCAGAGCCTTTCGTTAAAGTGGCCTTCG
TGTGCTGTGATCTTAATCCCGATATGCGTCCGTGTTTCGAAACTCTGCAC
GTTTGGCTGCAGCGTCTCGCCGATGATCTGGCCGCCGATCGTGTGCCGCC
AGAGCGTCTGCTGCACGAGATTGAGACCTTTCAGGAATGGTACGCCAGCT
CTGAGGACGCCTTGTCACCCACCTCCCAGCGCAGCTTAAATAATCTCGAT
GAGTTGGTCAAGAGTGCGGTGGATTCGGAAATTTCGCCGGTAGAAAAAGA
GAAGGAGAATATGGTGATTAAGCCCCAGGATATACCGAAATCTCCGCATC
TCGGCAAGGATTTCTCGCCCAGCGGCGAGAGACTGCGTGACAGTATGCGG
GCCAGGCGTCGCCAACGTTTCTTGGGCGCCCAGGAGGAGCGTCGTAATCT
CACGCCCGACACGGAGTCCAAGGAAAGGGCTTTGAAGAAGGCGCTGAAGA
AATGTCGTCCGTTTGGCGAAAGAGGTTACCTGGTGGATCTGCGTGCCGGT
GCCGAATTGCAGCTAGAGGATGTCAGGGATTTGAACACCTATTCCGATGT
GGACTCCAGTTGCGATACTAGCCTAAATTACCATGATGTAAATAATCTGC
CAGCAGCGCAAGAGGATGAGAATACAGTGAAACCGGGCAAGGAAGAACTG
TTGGAGGAGAGCACAAATAAACCCAGCAACCAGGAGTCACAACACCATCG
TCTGGCCATCGATGATATGCGCACCCGCCTGAATCAGTGCCGCAGCAAAT
TCGAGCATTTGGAGGAGGCTAGTCGGCGGAACTTCAACCAGTCGCAGCAC
TCCATGAAGAACTTTTTCAAAACCCCACCGGTGGCCCTTAAGATGTTTCA
GCGCCTGGAGCACGAGGCTGCAGCCCTGAATGGTGGCAACAATTGCCCAC
CGCCACCACCACGTACGCAGCGCATCAATCAGACGCCCATTTTCGGTCGA
AAGAATCCGCCAGTGGCAATCGTCGGGCAAAAACTACAGCATGCTGAGTC
CCTAGAGGACCTGGCCTCCAGCGGAGTTGCCAAACAGCTGGCCACACCAG
CACCCAAACGCAGCAAAGCCACAGCAACGACCAAAGGCGGCCAGAGCAGC
AATCCGCCACTTTTCCTGCCGCCTAGCCTTAACATAAGTGTCGCATTAAA
TAGCAATGGAAATGTGACCACAACGACCAATACCAATAGTAGTTGTCCAC
CATCCGCATCAGATTGGCTGCCGAAGAAGCACAAGCTAACTTTGCCACTT
CCGTCGGCCCAACAGCAGCGAACGAGCAGCAATCATCGCCTGCCAATGTG
CAATAACAAAGGGAAGACACTGAAGCCACTGCCAAGTCGCACGGGCAGTC
AAGGCATTCCCGCAAGCAATTGCGTCTCGCCGACGAGGAGCAGCAGGCCC
GGATCACCCACCAAGCATCTGGCCCAGAGGCACACAGCCGCCACGGCGCA
GCGACTGACAAATGCGGCCGCCACTCACCAGCAGCAGCATCAGCAACAAT
CCTCGAAGACGACGCGCCTGAATATCCTGAGTCCGGAAAAGGTGCATCGC
CTGGGCGCTCGACTCACCGATCAGAAGCAGAAAATGCGCGAGGAGGCCGC
AGCGACGGCCTCGTCCGTCGGAGGAGCCGGTTGTGCGGCAGGAACAGCGG
CTGGAAGCTTAAATGGTCATCGGACCATCGGATCCTCCGGCACACCGAAT
TCGGCGGTCGGTGAACGGAGGAGGCGAGCAGCTCCATCGCCGCCAGTTCG
CACGCATTTCAATACGCGCTGCGCAAGCTTTCTAGACCAT

BO34191.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
LIMK1-RD 3159 CG1848-PD 1..3156 17..3172 15765 100 Plus
LIMK1-RE 3708 CG1848-PE 608..3705 75..3172 15475 100 Plus
LIMK1-RA 3708 CG1848-PA 608..3705 75..3172 15475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
LIMK1-RD 4814 CG1848-RD 102..3257 17..3172 15765 100 Plus
LIMK1-RE 4520 CG1848-RE 907..4004 75..3172 15475 100 Plus
LIMK1-RA 4964 CG1848-RA 870..3967 75..3172 15475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12586310..12587902 2864..1272 7950 99.9 Minus
X 23542271 X 12587970..12589167 1273..76 5990 100 Minus
X 23542271 X 12585942..12586250 3172..2864 1545 100 Minus
X 23542271 X 12589524..12589582 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:08:56 has no hits.

BO34191.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-22 15:06:06 Download gff for BO34191.complete
Subject Subject Range Query Range Percent Splice Strand
LIMK1-RD 102..3257 17..3174 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:08 Download gff for BO34191.complete
Subject Subject Range Query Range Percent Splice Strand
LIMK1-RD 102..3257 17..3174 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:08 Download gff for BO34191.complete
Subject Subject Range Query Range Percent Splice Strand
X 12585938..12586249 2865..3174 99 <- Minus
X 12586310..12587900 1274..2864 99 <- Minus
X 12587970..12589167 76..1273 100 <- Minus
X 12589524..12589582 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-22 15:06:06 Download gff for BO34191.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12479971..12480282 2865..3174 99 <- Minus
arm_X 12480343..12481933 1274..2864 99 <- Minus
arm_X 12482003..12483200 76..1273 100 <- Minus
arm_X 12483557..12483615 17..75 100   Minus

BO34191.pep Sequence

Translation from 16 to 3190

> BO34191.pep
MSFWLHFVLKKILPWLKSTKIDVNLTNLHIGDRILEVNGTPVSDSSVEQI
DKLIRSNEKMLQLTVEHDPVQVCRSCSQADIQRAMSASTLILPLSTSASS
VEVGRERLYKTPGEQGTKARKLRQATNASTTIPPAAGATAMTQLKEKERC
SSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQRIFRATDLVIGE
KLGEGFFGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDH
RHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQVLPWPQRVRLARD
IACGMSYLHSMNIIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPSG
NMTPGGYGSGANSDAPMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMK
GLKYDEKVDVFSFGIMLCEIIGRVEADPDFMPRNSDFSLNQQEFREKFCA
QCPEPFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDLAADRVPPERLLH
EIETFQEWYASSEDALSPTSQRSLNNLDELVKSAVDSEISPVEKEKENMV
IKPQDIPKSPHLGKDFSPSGERLRDSMRARRRQRFLGAQEERRNLTPDTE
SKERALKKALKKCRPFGERGYLVDLRAGAELQLEDVRDLNTYSDVDSSCD
TSLNYHDVNNLPAAQEDENTVKPGKEELLEESTNKPSNQESQHHRLAIDD
MRTRLNQCRSKFEHLEEASRRNFNQSQHSMKNFFKTPPVALKMFQRLEHE
AAALNGGNNCPPPPPRTQRINQTPIFGRKNPPVAIVGQKLQHAESLEDLA
SSGVAKQLATPAPKRSKATATTKGGQSSNPPLFLPPSLNISVALNSNGNV
TTTTNTNSSCPPSASDWLPKKHKLTLPLPSAQQQRTSSNHRLPMCNNKGK
TLKPLPSRTGSQGIPASNCVSPTRSSRPGSPTKHLAQRHTAATAQRLTNA
AATHQQQHQQQSSKTTRLNILSPEKVHRLGARLTDQKQKMREEAAATASS
VGGAGCAAGTAAGSLNGHRTIGSSGTPNSAVGERRRRAAPSPPVRTHFNT
RCASFLDH

BO34191.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
LIMK1-PD 1052 CG1848-PD 1..1052 1..1052 5476 100 Plus
LIMK1-PE 1235 CG1848-PE 197..1235 14..1052 5377 99.5 Plus
LIMK1-PA 1235 CG1848-PA 197..1235 14..1052 5377 99.5 Plus
LIMK1-PF 1043 CG1848-PF 11..1043 20..1052 5367 99.9 Plus
LIMK1-PC 1257 CG1848-PC 225..1257 20..1052 5367 99.9 Plus