Clone BO34209 Report

Search the DGRC for BO34209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:342
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG30398-RA
Protein status:BO34209.pep: Imported from assembly
Sequenced Size:835

Clone Sequence Records

BO34209.complete Sequence

835 bp assembled on 2013-05-14

GenBank Submission: KX793859

> BO34209.complete
GAAGTTATCAGTCGACATGACAACCAGTCCCAACGTAGCAGAAGTGGATG
ATGGCGAGCTGCCGAAACTGGAAGCGATAATCAGCGCGCTGAAATGCGAG
CAGACGGGTCACATTATGGAGGCGATACTGCTCTACGAGGAGAGCATCTT
CAAGTTGTCCCAGATGGCCGATGCGGAGCCGAGTCGCCGCCAGCTGTGTG
GGAAGTATTTGAAGATGTACGAGGCGCGGGCCAAACAGCTGAGGGATCAG
GTCAAGGGTCACTTGCACACCAGCCGTATGCTGGATCACATCACCATCGA
GCAGGGTGCCAGGGGCAGAAGCTACCAGCGGCTGTTTGGTCCGTATTTGG
ACGATGCGGTTCGGGAGGCCCATCTCAACGAGCCACACCTCACGGAGCCA
CCACACTTTAGGAATTTGCTTAATTTTTTCGAGGTGCTGGTCAAGAACTG
TCGCTATCTAAAGTATATTCGCCTCACTACGCGCCCAGATGCGACGGCGC
CCAAGAATCAGTTGCAGATGCTGCAGCAAATGCAGAGCGATCTGGCCGGT
GGCAACATCCAGATGAATTTCCAGATGGACGACAGTTTGCACGATCGCAA
GATCGTTCTTAGCTCGGGAGTGGTCATTAAGATTGGCCGTGGCCTTCACT
ACTTCGAGCCCATGGAGGGTTCGTACAGTTTGGGTCTGTGCGATTTCGAT
TTTCGCAAGTGCCTGGCCACCGAGGTGGACATCTGGAAGTGTCGTCCTTT
TGCGAGGCGCCTTAAGGATACACAGGAGGGCGAGGATCGACCGGAGGCAC
ACGGCTACTCCAGCGATGCAAGCTTTCTAGACCAT

BO34209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30398-RA 804 CG30398-PA 1..801 17..817 3945 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30398-RA 1029 CG30398-RA 128..928 17..817 3945 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21717931..21718731 17..817 3945 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 13:36:35 has no hits.

BO34209.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:51:04 Download gff for BO34209.complete
Subject Subject Range Query Range Percent Splice Strand
CG30398-RA 99..899 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:57 Download gff for BO34209.complete
Subject Subject Range Query Range Percent Splice Strand
CG30398-RA 99..899 17..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:59 Download gff for BO34209.complete
Subject Subject Range Query Range Percent Splice Strand
CG30398-RA 128..928 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:59 Download gff for BO34209.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21717931..21718731 17..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:57 Download gff for BO34209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17605436..17606236 17..819 99   Plus

BO34209.pep Sequence

Translation from 16 to 835

> BO34209.pep
MTTSPNVAEVDDGELPKLEAIISALKCEQTGHIMEAILLYEESIFKLSQM
ADAEPSRRQLCGKYLKMYEARAKQLRDQVKGHLHTSRMLDHITIEQGARG
RSYQRLFGPYLDDAVREAHLNEPHLTEPPHFRNLLNFFEVLVKNCRYLKY
IRLTTRPDATAPKNQLQMLQQMQSDLAGGNIQMNFQMDDSLHDRKIVLSS
GVVIKIGRGLHYFEPMEGSYSLGLCDFDFRKCLATEVDIWKCRPFARRLK
DTQEGEDRPEAHGYSSDASFLDH

BO34209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30398-PA 267 CG30398-PA 1..267 1..267 1406 100 Plus
CG14985-PB 241 CG14985-PB 9..235 19..241 470 41.4 Plus
CG14985-PC 190 CG14985-PC 9..190 19..196 315 37.4 Plus