BO34210.complete Sequence
2452 bp assembled on 2013-11-20
GenBank Submission: KX796499
> BO34210.complete
GAAGTTATCAGTCGACATGCTATTGTCCAGGCTAACGTGGCAGGCCAGGA
TTCTAACTCGTCTTCTGTGTAATAAGATGGCCAGCAAGGGATTGCACAAT
GAGGACAACAAGTTGGACACTTTCCGTCGCATCTGTGATGAAATTGCCGG
CGAGTCAAGTTACCTGAAGAAAGCGGAGAGACTGCAGCGATTCTTCGAAA
AGGGGAGCAGTGGCAAGGGCTTCAAGGGCGACACCGTGCTCTGGGTGCAG
TTCCTCATTCCGGCGGCCAATCAGCGCGTCTACAATCTGCAGAACAAGGC
GCTGATCAAACTCTTTTCGCGCATTTTTAATGCAGATCAACAGCAAATGC
ATTTGGATCTAGAGCAGGATGGCGACGTTTCGGAAACTCTACGCAAGCAC
TTTGCTGCTTCTAAGAAACTCAAGCCGCAAAAGCAGAGCAAACTCTATCT
GCAGGAGGTGGAGGAAATGCTCCTGCACCTGGTGGAGCGTACCAAAGAGG
ATGAGCAAACAGATCTGCTACAGAAGTTGTGCTCGAAGGCCACTGACCTG
GATCTGCGCACCTTTATTCGCTTGGTGAAGCACGACTTAAGAATCAATGC
CCGAGCCCGGCACATCCTGGATGCTTTTGGTCCTGATGCCTACCCCGCAT
ATCAGTCTTCCCGCGATTTGGTGGCAATTGTCGAACAGTTTGCCACCAAA
GAAAATAAAAATTATGCTAGTAGTCCCGTTAAGAAGACTAAGAAAACGAG
CTCGAGTGCAATTCAGGTAATGACACCCATATCGCCCATGTTGGCCAGTC
CCTGCAAGTCGGTGGAGGACGCCTTCAAGAAGAGCCCCACTGGACTATAT
AGCGAGATCAAATACGATGGAGAGCGAGTTCAAATCCACAAGCAGGGCAA
CGACTTCAAGTTCTTTAGTCGCAATCTAAAGCCTGTGGTGGATCACAAGA
TACGGGCTCTGAAAAAATATATTCCGCAAGCCTTTCCTGGCGGTGGCGAA
ATGATACTGGACTCTGAGATCATTCTGGTCGACACTGACACAGGAGCACT
GCTGCCCTTTGGTTCGTTGGGTGCCCATAAGAAGCAGACTTTCGCCAATG
CTGCTGTATGCTTATTCGTCTTCGATTGCATACTGTATGATGGCGAGGAT
TTGACCCAGCTGCCATTTCGCAAGCGTCGCGAGATTCTTGAGCAGAATAT
TCAACCCATTAAATCCCACGTGCAGCTGTCGGAGTCGGAGTTCCTCAAGA
CCACGAGGGAACTGGCCGCGATGACGGCCAGGGTGTTACATGCCAATCTG
GAGGGTGTGGTCCTAAAGAGTCCAACCAGCACATATCAGCCCGGCAAAAG
GAACTGGCTTAAGGTCAAGAAGGATTACCTATTCGACGGAAAGATGGCTG
ACACCGCGGACTTGGTTGTTTTGGGTGCTTGGTACGGATCAGGGAAGAAA
GGTGGCACGCTTAGTATTTTTCTCATGGGCTGCTACGATGCGTTTGGGCG
TTTGTGGAAGACAGTGACCAAAGTGCACTCTGGCTTGGATGATGCTACCA
ACGCAGAGGTACATAAATCACTAATCAAACTAACCGAACGTGCTGATGCC
AACGCAATTCCCAGTTGGCTGTTATGCAGTAAGTCCCTTGTACCAGATGT
ACTGGCCAAGGATCCGATGAAAATGCCAGTATGGGAGATTACTGGCGCAG
AGTTCACCAAGTCCGATGCCCATACCGCGTCTGGAATCTCAGTACGATTT
CCCAGGATTACTCGTCGTCGCAGTGATAAATCAGCCAAAGAGGCCAATGA
TCTGGCCCATCTAGAAGATCTTTTCGAGGCCTCAAAATCGAATGTAAATG
TTGATTTACTTCTGGCCAATTGTAGTAAAGATGAGACAGCAATGAATAAC
AAAACAACTCCTGAAAAGGAGAAAAAACTGAATGGCAATCAATCAAATGG
TAGTAAGAAATTGAAAAGGTCCAATACTGGTTCTGATGACGAAGACGGAG
CTCCTGTGCTCAGCAAACGCAAGGAGTCCAAAGCGATTCGAAGCTTGTCC
CCTTCGCAAAAGGGATTAAAGGATTTTTTTAAGCCCAGCAAGGAGTTTAA
ATCAGTTGTGAAAAAGGAACCAAAGGAGGATGAAGGCAATATTGAATCCA
CTAGCTCGAAACCCCAGTTGTTCGAAGGATTGGTGGCACACTTTGCCATG
GAGAAGGATTCAAGTAAACTGATGCAGCAGTTTTCACAGCATGGAGGATG
CTGTACAACAGAACCACAAAAAGCTGATCTGGTCTTTTATGCGAATACGA
ACGAGGCATTGGACCTAGAGAAGCTTAGAACGCTCTATCGTCGTAGCTGC
CGGCACTTGAATGTAAGCTGGCTCCAAAGCTGTCTCGATACTCAGAGTCG
TCAACCTTTTCCCCTACACGCCGTGATGATGAAAGCAAGCTTTCTAGACC
AT
BO34210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig3-RA | 2421 | CG17227-PA | 1..2418 | 17..2434 | 12075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig3-RA | 2604 | CG17227-RA | 95..2512 | 17..2434 | 12075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12399272..12400438 | 2328..1162 | 5835 | 100 | Minus |
| 3R | 32079331 | 3R | 12400526..12401320 | 1162..368 | 3975 | 100 | Minus |
| 3R | 32079331 | 3R | 12401394..12401745 | 368..17 | 1745 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12399103..12399212 | 2434..2325 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:35:21 has no hits.
BO34210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-20 11:31:28 Download gff for
BO34210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig3-RA | 95..2512 | 17..2436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:43 Download gff for
BO34210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig3-RA | 95..2512 | 17..2436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:43 Download gff for
BO34210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12399100..12399208 | 2329..2436 | 98 | <- | Minus |
| 3R | 12399272..12400438 | 1162..2328 | 100 | <- | Minus |
| 3R | 12400527..12401319 | 369..1161 | 100 | <- | Minus |
| 3R | 12401394..12401745 | 17..368 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-20 11:31:28 Download gff for
BO34210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8227116..8227467 | 17..368 | 99 | | Minus |
| arm_3R | 8224822..8224930 | 2329..2436 | 98 | <- | Minus |
| arm_3R | 8224994..8226160 | 1162..2328 | 100 | <- | Minus |
| arm_3R | 8226249..8227041 | 369..1161 | 100 | <- | Minus |
BO34210.pep Sequence
Translation from 16 to 2452
> BO34210.pep
MLLSRLTWQARILTRLLCNKMASKGLHNEDNKLDTFRRICDEIAGESSYL
KKAERLQRFFEKGSSGKGFKGDTVLWVQFLIPAANQRVYNLQNKALIKLF
SRIFNADQQQMHLDLEQDGDVSETLRKHFAASKKLKPQKQSKLYLQEVEE
MLLHLVERTKEDEQTDLLQKLCSKATDLDLRTFIRLVKHDLRINARARHI
LDAFGPDAYPAYQSSRDLVAIVEQFATKENKNYASSPVKKTKKTSSSAIQ
VMTPISPMLASPCKSVEDAFKKSPTGLYSEIKYDGERVQIHKQGNDFKFF
SRNLKPVVDHKIRALKKYIPQAFPGGGEMILDSEIILVDTDTGALLPFGS
LGAHKKQTFANAAVCLFVFDCILYDGEDLTQLPFRKRREILEQNIQPIKS
HVQLSESEFLKTTRELAAMTARVLHANLEGVVLKSPTSTYQPGKRNWLKV
KKDYLFDGKMADTADLVVLGAWYGSGKKGGTLSIFLMGCYDAFGRLWKTV
TKVHSGLDDATNAEVHKSLIKLTERADANAIPSWLLCSKSLVPDVLAKDP
MKMPVWEITGAEFTKSDAHTASGISVRFPRITRRRSDKSAKEANDLAHLE
DLFEASKSNVNVDLLLANCSKDETAMNNKTTPEKEKKLNGNQSNGSKKLK
RSNTGSDDEDGAPVLSKRKESKAIRSLSPSQKGLKDFFKPSKEFKSVVKK
EPKEDEGNIESTSSKPQLFEGLVAHFAMEKDSSKLMQQFSQHGGCCTTEP
QKADLVFYANTNEALDLEKLRTLYRRSCRHLNVSWLQSCLDTQSRQPFPL
HAVMMKASFLDH
BO34210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig3-PA | 806 | CG17227-PA | 1..806 | 1..806 | 4151 | 100 | Plus |
| DNA-ligI-PA | 747 | CG5602-PA | 366..733 | 254..609 | 400 | 30.3 | Plus |
| Lig4-PA | 918 | CG12176-PA | 70..646 | 77..642 | 251 | 23.8 | Plus |
