BO34222.complete Sequence
1315 bp assembled on 2013-05-14
GenBank Submission: KX798033
> BO34222.complete
GAAGTTATCAGTCGACATGGTGCTGCGATCGGGAATCATAATTCCGTTTC
AGTTTCGCGACACGAAGAAGCTGCTGATGATCGGGGTGCCGCAGGAGAAC
CGCGACCTAAACATATGGGACCTAAAGAACGTGGTGCGCGCCGCTTTCGG
GATCTACAACTTCGAGTTCCGGAACAAGAAGATCGGCTTCAACATCCCGG
ACGAACTGCTGCTGCACTATCTGGCCCAGAGGCACGACCTCACCAACTTC
GTTATAGAGATCAGTCAAGTCTACGATGTCGGCCTGGACAACTATGTGCT
GAATCGCCAGTGCCGCTGTACAGACCAGAAAATGCTCAACGATTCGCCAA
CGCCCGAGGAACCAACCAATTTGTGCCAGCCCAGCAATGTGCTAGAGGCC
GCGCCGACTCCGCTCATGTCGCTGCCACCCTGCGAGGACGAGGATCACGA
GCCTGAGCATGAGCACGAGCACGAGGAGAGCATGAAGTATCGGATCGATA
AGGAGAGCAGTGGAGCTGCCTCCGCAGAGCTGGGCTTGCCCGCCTACGAG
GCCTGCTCGCCCAAGATGGACTACGACACGCAGGACGAGCTGCCGGACTC
GCCGCACTCGCAGCCGCTGCCACCACCGCCTTTCCCATTGTCCACGGCCT
TGCCGCTGCCGCCTCCGCCCACCTCGCATCACCAACATCTGCAACAGCAG
CAGCAGCAGCAGCATGAGGAGCGCATCCAGCAAGAGTACATCATCCAGCA
GCAGCAGCAACATCAGCAGATTCAGCAGCAACAACACCACCTGGCTCTCC
TGCAGCAGCAGCAGCAGCAGGAGCAACAGCAGCAGATTCAGCAGCACCAG
GGAGTCAACATAGCCATAGGCACCACTGCGACAAACAACATTCGACAGCG
CAAGGAGCGCATGTCCAAGCGGCAGAAGGAACTGTACGTACACTTCCTGC
AGCAGCACCAGTTCATCAACGATCACCGTCGCAATGATCCTGCGCTGGAC
CCATACTGGCTGAAGCTGGCCAACCTGCTGAACGCCGTGCCGCAGGGTGC
CGTGAAGCACGTGACCGAGTGGAAGCAGACCTTCGACAACTGGCGATACC
GGATCTTCCTTTACGCGCGCTACAACTCTAAGCTGCAGGACGAGGAGGCG
CAGAATCCGCGAAACTTCAAGCCGCTGACCCGGACCGACAAACAGGCCTA
CATCATGTGGATCCGGAACCCGGACACCGCGCCGCCCGACCTGGACAAGA
TGCGCAATGTCTTCTGCAATCTGGAGGAGTCGGCGGTGCAGCAGGAGGCA
AGCTTTCTAGACCAT
BO34222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42676-RF | 1284 | CG42676-PF | 1..1281 | 17..1297 | 6390 | 99.9 | Plus |
| CG42676-RD | 1284 | CG42676-PD | 1..1281 | 17..1297 | 6390 | 99.9 | Plus |
| CG42676-RE | 261 | CG42676-PE | 1..253 | 17..269 | 1250 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42676-RF | 1668 | CG42676-RF | 104..1384 | 17..1297 | 6390 | 99.9 | Plus |
| CG42676-RD | 1567 | CG13923-RB | 104..1384 | 17..1297 | 6390 | 99.9 | Plus |
| CG42676-RE | 1577 | CG42676-RE | 104..356 | 17..269 | 1250 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1805008..1805459 | 268..719 | 2260 | 100 | Plus |
| 3L | 28110227 | 3L | 1806236..1806636 | 897..1297 | 2005 | 100 | Plus |
| 3L | 28110227 | 3L | 1805529..1805708 | 717..896 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 1803432..1803567 | 134..269 | 665 | 99.3 | Plus |
| 3L | 28110227 | 3L | 1803210..1803327 | 17..134 | 590 | 100 | Plus |
| 3L | 28110227 | 3L | 1804540..1804657 | 1017..1134 | 185 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:33:15 has no hits.
BO34222.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:49:48 Download gff for
BO34222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RD | 92..1372 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:09 Download gff for
BO34222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RD | 104..1384 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:29 Download gff for
BO34222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RD | 104..1384 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:29 Download gff for
BO34222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1806236..1806636 | 897..1299 | 99 | | Plus |
| 3L | 1803210..1803327 | 17..134 | 100 | -> | Plus |
| 3L | 1803433..1803567 | 135..269 | 99 | -> | Plus |
| 3L | 1805010..1805458 | 270..718 | 100 | -> | Plus |
| 3L | 1805531..1805708 | 719..896 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:09 Download gff for
BO34222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1803210..1803327 | 17..134 | 100 | -> | Plus |
| arm_3L | 1803433..1803567 | 135..269 | 99 | -> | Plus |
| arm_3L | 1805010..1805458 | 270..718 | 100 | -> | Plus |
| arm_3L | 1805531..1805708 | 719..896 | 100 | -> | Plus |
| arm_3L | 1806236..1806636 | 897..1299 | 99 | | Plus |
BO34222.pep Sequence
Translation from 16 to 1315
> BO34222.pep
MVLRSGIIIPFQFRDTKKLLMIGVPQENRDLNIWDLKNVVRAAFGIYNFE
FRNKKIGFNIPDELLLHYLAQRHDLTNFVIEISQVYDVGLDNYVLNRQCR
CTDQKMLNDSPTPEEPTNLCQPSNVLEAAPTPLMSLPPCEDEDHEPEHEH
EHEESMKYRIDKESSGAASAELGLPAYEACSPKMDYDTQDELPDSPHSQP
LPPPPFPLSTALPLPPPPTSHHQHLQQQQQQQHEERIQQEYIIQQQQQHQ
QIQQQQHHLALLQQQQQQEQQQQIQQHQGVNIAIGTTATNNIRQRKERMS
KRQKELYVHFLQQHQFINDHRRNDPALDPYWLKLANLLNAVPQGAVKHVT
EWKQTFDNWRYRIFLYARYNSKLQDEEAQNPRNFKPLTRTDKQAYIMWIR
NPDTAPPDLDKMRNVFCNLEESAVQQEASFLDH
BO34222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42676-PF | 427 | CG42676-PF | 1..427 | 1..427 | 2300 | 100 | Plus |
| CG42676-PD | 427 | CG13923-PB | 1..427 | 1..427 | 2300 | 100 | Plus |
| CG42676-PC | 409 | CG42676-PC | 1..400 | 1..422 | 831 | 45.7 | Plus |
| CG42676-PE | 86 | CG42676-PE | 1..84 | 1..84 | 435 | 100 | Plus |
| CG15772-PB | 259 | CG15772-PB | 18..96 | 203..278 | 171 | 50 | Plus |
