BO34225.complete Sequence
1474 bp assembled on 2013-05-14
GenBank Submission: KX797144
> BO34225.complete
GAAGTTATCAGTCGACATGAATAGTAATCGAACGTCGTCTTCGCACAATT
CGAGAAATCTAAAGATTCTTAATGCCAGTTTTGACGTTCCACGACCTCCA
GGCGGCGGCAACTCGCCCTTGCCGTCACAGGGTCGCTCTGTACGCGAATT
GGAGGAGCAGATGTCCGCGCTGCGCAAGGAGAACTTCAATCTAAAGCTGC
GCATCTACTTCCTCGAGGAGGGTCAGCCGGGTGCCCGGGCAGACAGCTCC
ACAGAATCCTTAAGCAAACAGCTCATCGATGCCAAGATCGAAATCGCGAC
ATTGAGAAAAACTGTCGATGTAAAGATGGAGCTGCTCAAGGATGCCGCTC
GAGCCATTTCTCATCACGAGGAATTGCAGCGCAAAGCAGACATTGACAGC
CAGGCAATAATCGACGAGTTGCAAGAGCAAATACACGCCTATCAGATGGC
GGAGTCTGGTGGTCAACCTGTCGAAAATATTGCCAAAACCAGGAAAATGT
TGCGCCTTGAATCGGAGGTGCAGAGATTGGAGGAGGAACTGGTGAATATC
GAAGCTCGTAACGTTGCAGCCCGGAACGAGCTGGAATTCATGTTGGCCGA
GCGCCTAGAATCCCTAACAGCCTGTGAGGGCAAGATTCAAGAGCTGGCCA
TCAAGAATTCCGAACTGGTAGAGCGTCTTGAAAAGGAAACAGCATCCGCC
GAGTCATCCAACGAGGCCATAGACTCTCTTAAGGTTGAATTAGAAGCCTG
TAGGAAAGAGAATCAGGATCTGGTGACCTCCATTCGAACCTTAAAACATG
ATATGAAGCGACAAGTCCGCTCGATGAAGGAGGCCGCCAATACGATGGAC
GTGCAGCGTCAGTCCATCCTGCTCTTGGAAGCCACAATCAAGCGCAAGGA
AAAGTCGTGCGGAAGTATGCAGAAGAACGTGCTAAACTATGAGGCACTGA
TAGCCAAGTTAAACGCCGAACTGGAGACTATGAGGCAACAGAATGTTTAC
TTCCGTGAGCTCTCCGAAAACCTACAACAGAAGGAGGTGCGGCAACTGGA
TCGCGGCGTGGCCATCGTGCAGCCGATGCGCATGACGGCGGATGCCGGGC
GTTTTGTGTGGCAGTCAGGGACCATCGTCGCACAAGAGCCTTTGCCATTG
GAAAGGCAGTCAGCTGCAGCAACAAGCAACGTATCCGTGTCCGCAGTACG
TTTATCATCAGGGCCACCACCAGACCAGACATACCCAGTTAATGGCCATG
ACCGCGCCAAGTACGGCCTTCTACAACTATTCGCTGCCAAGCTTGACTGG
ATTTCGGCAGTTCCTTTGGCGCTGGGGCACTTAGCCCTCAAGATCATCCT
CTTGGCTATGCGGTTGCACTCCTGCCTCCAGAATGTCCATATCCCTCTTA
GGGTGTCCTTTGAGCTGGGGCATTCCATGCCGTTGGCTGGCATTCTGTAC
TCTATTGCAAGCTTTCTAGACCAT
BO34225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RG | 1443 | CG4832-PG | 1..1440 | 17..1456 | 7200 | 100 | Plus |
| cnn-RJ | 3963 | CG4832-PJ | 1..1387 | 17..1403 | 6935 | 100 | Plus |
| cnn-RL | 4137 | CG4832-PL | 230..1561 | 72..1403 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RG | 1709 | CG4832-RG | 109..1549 | 16..1456 | 7205 | 100 | Plus |
| cnn-RJ | 4830 | CG4832-RJ | 109..1496 | 16..1403 | 6940 | 100 | Plus |
| cnn-RL | 5012 | CG4832-RL | 347..1678 | 72..1403 | 6660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13444765..13445138 | 445..72 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 13443400..13443695 | 1456..1161 | 1480 | 100 | Minus |
| 2R | 25286936 | 2R | 13444427..13444696 | 713..444 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 13443888..13444106 | 1099..881 | 1095 | 100 | Minus |
| 2R | 25286936 | 2R | 13444174..13444342 | 881..713 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 13443745..13443817 | 1171..1099 | 335 | 97.3 | Minus |
| 2R | 25286936 | 2R | 13445211..13445266 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:33:23 has no hits.
BO34225.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:49:53 Download gff for
BO34225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RG | 98..1537 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:14 Download gff for
BO34225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RG | 110..1549 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:33 Download gff for
BO34225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RG | 110..1549 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:33 Download gff for
BO34225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13444428..13444694 | 446..712 | 100 | <- | Minus |
| 2R | 13444765..13445138 | 72..445 | 100 | <- | Minus |
| 2R | 13443753..13443816 | 1100..1163 | 100 | <- | Minus |
| 2R | 13445211..13445265 | 17..71 | 100 | | Minus |
| 2R | 13443888..13444106 | 881..1099 | 100 | <- | Minus |
| 2R | 13444175..13444342 | 713..880 | 100 | <- | Minus |
| 2R | 13443397..13443692 | 1164..1458 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:14 Download gff for
BO34225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9331680..9331847 | 713..880 | 100 | <- | Minus |
| arm_2R | 9331933..9332199 | 446..712 | 100 | <- | Minus |
| arm_2R | 9331258..9331321 | 1100..1163 | 100 | <- | Minus |
| arm_2R | 9331393..9331611 | 881..1099 | 100 | <- | Minus |
| arm_2R | 9330902..9331197 | 1164..1458 | 99 | <- | Minus |
| arm_2R | 9332270..9332643 | 72..445 | 100 | <- | Minus |
| arm_2R | 9332716..9332770 | 17..71 | 100 | | Minus |
BO34225.pep Sequence
Translation from 16 to 1474
> BO34225.pep
MNSNRTSSSHNSRNLKILNASFDVPRPPGGGNSPLPSQGRSVRELEEQMS
ALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIEIATLRKTV
DVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQMAESGGQ
PVENIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESL
TACEGKIQELAIKNSELVERLEKETASAESSNEAIDSLKVELEACRKENQ
DLVTSIRTLKHDMKRQVRSMKEAANTMDVQRQSILLLEATIKRKEKSCGS
MQKNVLNYEALIAKLNAELETMRQQNVYFRELSENLQQKEVRQLDRGVAI
VQPMRMTADAGRFVWQSGTIVAQEPLPLERQSAAATSNVSVSAVRLSSGP
PPDQTYPVNGHDRAKYGLLQLFAAKLDWISAVPLALGHLALKIILLAMRL
HSCLQNVHIPLRVSFELGHSMPLAGILYSIASFLDH
BO34225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-PG | 480 | CG4832-PG | 1..480 | 1..480 | 2373 | 100 | Plus |
| cnn-PI | 500 | CG4832-PI | 1..500 | 1..480 | 2342 | 96 | Plus |
| cnn-PJ | 1320 | CG4832-PJ | 1..468 | 1..468 | 2293 | 99.1 | Plus |
| cnn-PL | 1378 | CG4832-PL | 78..526 | 20..468 | 2198 | 99.1 | Plus |
| cnn-PH | 462 | CG4832-PH | 1..389 | 1..399 | 1770 | 92 | Plus |
