BO34230.complete Sequence
1744 bp assembled on 2013-09-16
GenBank Submission: KX799149
> BO34230.complete
GAAGTTATCAGTCGACATGCCACGCAACCCTGTTGAACCATTTCAAGAAC
CCCTATACCAACATACCCTCGATGGCAGCAGACAGAAACATTCGTCGGTG
ACACAGGATGTGCTCCCGCCCTCTTATAACAAGGACGATGAATATCAATG
TTGCAACATGCCGGAGTGCCCGAATAATAGCATACCCCTTCAGATTCCGA
AAAATTCTTTACCTCGCTTTCAACCTCTAGTCAACGTATCTCAACATTCC
CGATCCCATAGCTTCCCCAGGCAAAATTACAGAAATAATAAGACTAGTCA
TCATAATTCCACCCACAACCACTCGGACAAAAGGATCAAACCGCAAACAC
CGTGCGAGTTAAAAGTACCGAGCGGAAACCGTTGTCCCACCGATCAGAGC
AGTAATCATGATACGGCTACTGGCTGCAGAAATAACACCTCAATCGATTG
GAATAATAGCTCTCAAGTTGGCATGAACTATGGCGAGTTTCAAAGACGCC
AATTGCTGTTGCAAAAAATTCAACAGCAGCAATATCAGCAACAGCAAGCT
AGACAGCAGAATCAAGCGAATTTATCTTGGTTGGAAGATGAAGATCCCAT
TGAATTTGCACCTGATCTCAATAGCACGAGAATAAATCAAGATGATCGTC
ACCAGCAATCCCGCCTGCAACCAAACTCAATTTGTCAGAAATGCAACTCT
CGCCAGCAACAAAGTGCGTCACGATCAATTCTTGAGTGCGATCAAACACC
AGAAATGGTGCGTAATCAAACGAAGTACGAAACCAAAACTAATGAAACAA
GTTATCTTCAGCCACCAGAGACTTTGCGAAACGCTAGATGTAAACCACAG
GCGAACCAGAGTCTCAGAAACCAGTCGCAAGATATTTGCCAAGATGTCTC
TATGAATCAGATATCCAATTGTGAGCAATCTATGAGTAAGAATACAAAAT
ATTACTCGGATCCCCCCGAAAGTCAATATAGTTGCTGTAGTCGTGGCTCT
ACTGCCTGTGACAGAAGTATGAAAGATAGTCAAAACTATGCCTGTTGTGC
AAACACGTCTGCCTCCGGAAATCAAAGACTTTTGGAAATGTCTCAAGTAA
TGTCAGGGAGGTCGTGCTCGACTCCAACTTCGCTGGAGAAAACTAAGCGA
AATTCTTCCTTGCGAGGACGTTCAATGCGAGTGCCCGTTCAAACACCTGA
GGATCGTTTGGTTGAGCGCATTCAGAACGAATATCACGAAACCTTTGTAA
ATGATCCCTATTGTCCTGGCGTTATACAAGCCAGTCTCGATGGAAGTGAG
AATTTCAACGAGTACTCCAGGGAGATTGCTTTTGCAGGACCCATTCCGGA
GAAACCATATCCGGTGGATCCTGTCACCATGATAGAAGCAATCAAGTTGC
GCATCGACCACGAGCGCAAAGAGATACGCAAAGAAAAGAATCGAAGTGAG
GAGGGAAATAGAGATTTGAGAAATCAATCAAAAGAGCGCAGGTCAAGGCG
TCCACGGACAACAATCAGTGAGGAAATTGATTCTCATTTTAGTCCGAAAA
TTAAGTCGGAAGTCAATAGAAGTGTGGCTGCCTTTCTGAAAGCCGAGACC
GAGTATCGTACCAGTTTCGAAAGAGATTCCGCCTTTGATGCGCATATCAA
TCGCTTTGAAACTAATCTCTTTGATGAAAGAATTAAAGTCCATTCCTATT
CAGCCACAACAACGCCCACTCATCGGGCAAGCTTTCTAGACCAT
BO34230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32181-RB | 1713 | CG32181-PB | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32181-RB | 2276 | CG32181-RB | 365..2074 | 17..1726 | 8550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17762038..17762466 | 1197..1625 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 17760720..17760976 | 352..608 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 17761595..17761846 | 872..1123 | 1260 | 100 | Plus |
| 3L | 28110227 | 3L | 17760401..17760574 | 146..319 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 17761034..17761142 | 608..716 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 17762601..17762702 | 1625..1726 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 17761359..17761456 | 774..871 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 17760146..17760241 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 17761899..17761971 | 1124..1196 | 365 | 100 | Plus |
| 3L | 28110227 | 3L | 17761202..17761261 | 716..775 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6844 | 491..565 | 131 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1126 | 499..565 | 128 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2287..2450 | 394..565 | 119 | 56.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1162 | 471..559 | 117 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2405 | 471..565 | 114 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6793 | 500..565 | 114 | 69.7 | Plus |
BO34230.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:48:16 Download gff for
BO34230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32181-RB | 365..2074 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:15 Download gff for
BO34230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32181-RB | 365..2074 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:15 Download gff for
BO34230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17761595..17761846 | 872..1123 | 100 | -> | Plus |
| 3L | 17761899..17761971 | 1124..1196 | 100 | -> | Plus |
| 3L | 17761034..17761141 | 608..715 | 100 | -> | Plus |
| 3L | 17761202..17761261 | 716..775 | 100 | -> | Plus |
| 3L | 17761361..17761456 | 776..871 | 100 | -> | Plus |
| 3L | 17760146..17760241 | 17..112 | 100 | -> | Plus |
| 3L | 17760314..17760346 | 113..145 | 100 | -> | Plus |
| 3L | 17760401..17760574 | 146..319 | 100 | -> | Plus |
| 3L | 17760628..17760660 | 320..352 | 100 | -> | Plus |
| 3L | 17760721..17760975 | 353..607 | 100 | -> | Plus |
| 3L | 17762038..17762465 | 1197..1624 | 100 | -> | Plus |
| 3L | 17762601..17762702 | 1625..1728 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:48:16 Download gff for
BO34230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17753246..17753341 | 17..112 | 100 | -> | Plus |
| arm_3L | 17753414..17753446 | 113..145 | 100 | -> | Plus |
| arm_3L | 17753501..17753674 | 146..319 | 100 | -> | Plus |
| arm_3L | 17753728..17753760 | 320..352 | 100 | -> | Plus |
| arm_3L | 17753821..17754075 | 353..607 | 100 | -> | Plus |
| arm_3L | 17754134..17754241 | 608..715 | 100 | -> | Plus |
| arm_3L | 17754302..17754361 | 716..775 | 100 | -> | Plus |
| arm_3L | 17754461..17754556 | 776..871 | 100 | -> | Plus |
| arm_3L | 17754695..17754946 | 872..1123 | 100 | -> | Plus |
| arm_3L | 17754999..17755071 | 1124..1196 | 100 | -> | Plus |
| arm_3L | 17755138..17755565 | 1197..1624 | 100 | -> | Plus |
| arm_3L | 17755701..17755802 | 1625..1728 | 98 | | Plus |
BO34230.pep Sequence
Translation from 16 to 1744
> BO34230.pep
MPRNPVEPFQEPLYQHTLDGSRQKHSSVTQDVLPPSYNKDDEYQCCNMPE
CPNNSIPLQIPKNSLPRFQPLVNVSQHSRSHSFPRQNYRNNKTSHHNSTH
NHSDKRIKPQTPCELKVPSGNRCPTDQSSNHDTATGCRNNTSIDWNNSSQ
VGMNYGEFQRRQLLLQKIQQQQYQQQQARQQNQANLSWLEDEDPIEFAPD
LNSTRINQDDRHQQSRLQPNSICQKCNSRQQQSASRSILECDQTPEMVRN
QTKYETKTNETSYLQPPETLRNARCKPQANQSLRNQSQDICQDVSMNQIS
NCEQSMSKNTKYYSDPPESQYSCCSRGSTACDRSMKDSQNYACCANTSAS
GNQRLLEMSQVMSGRSCSTPTSLEKTKRNSSLRGRSMRVPVQTPEDRLVE
RIQNEYHETFVNDPYCPGVIQASLDGSENFNEYSREIAFAGPIPEKPYPV
DPVTMIEAIKLRIDHERKEIRKEKNRSEEGNRDLRNQSKERRSRRPRTTI
SEEIDSHFSPKIKSEVNRSVAAFLKAETEYRTSFERDSAFDAHINRFETN
LFDERIKVHSYSATTTPTHRASFLDH
BO34230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32181-PB | 570 | CG32181-PB | 1..570 | 1..570 | 3044 | 100 | Plus |
