BO34241.complete Sequence
625 bp assembled on 2013-05-14
GenBank Submission: KX796887
> BO34241.complete
GAAGTTATCAGTCGACATGTCCCTCCGTTTATTTATCCATAGTCGCGCAT
TCGGTGCGCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCCGGAGC
AGCGGCGGGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCGCACAA
AGATCAACTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAGCCTCG
CTGCGCTACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCCCTGTG
GCGGGGGAACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGCCATAC
AGTTCACGGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACAAGGAC
GGCACCAACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCGGGAAT
CACCTCACAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCGCATGG
CCGTCACGGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCTTCACC
AAGATCTGGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTACTGGGC
GACCGTTCTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCACCTACG
AGACTCTGCAAGCTTTCTAGACCAT
BO34241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFB-RA | 594 | CG33488-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
| att-ORFA-RF | 1098 | CG4241-PF | 194..746 | 55..607 | 2765 | 100 | Plus |
| att-ORFA-RD | 1095 | CG4241-PD | 194..746 | 55..607 | 2765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-RB | 1336 | CG4241-RB | 120..710 | 17..607 | 2955 | 100 | Plus |
| att-ORFB-RA | 1336 | CG33488-RA | 120..710 | 17..607 | 2955 | 100 | Plus |
| att-ORFA-RE | 1440 | CG4241-RE | 261..814 | 54..607 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20553896..20554204 | 358..50 | 1530 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20553587..20553835 | 607..359 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 20554253..20554290 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:33:32 has no hits.
BO34241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:49:56 Download gff for
BO34241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFB-RA | 120..710 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:18 Download gff for
BO34241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RB | 120..710 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:38 Download gff for
BO34241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFB-RA | 120..710 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:38 Download gff for
BO34241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20553585..20553835 | 359..609 | 99 | <- | Minus |
| 3R | 20553896..20554199 | 55..358 | 100 | <- | Minus |
| 3R | 20554253..20554290 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:18 Download gff for
BO34241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16379975..16380012 | 17..54 | 100 | | Minus |
| arm_3R | 16379307..16379557 | 359..609 | 99 | <- | Minus |
| arm_3R | 16379618..16379921 | 55..358 | 100 | <- | Minus |
BO34241.pep Sequence
Translation from 16 to 625
> BO34241.pep
MSLRLFIHSRAFGAPENRPGGDQPDIRSSGGGAGQDGHRPAGPHKDQLPD
PQRCALLVSSLAALPAKHLCQRGRFGPVAGELGHDGQNRALRSHTVHGPR
AVASHPARRQGRHQHERSSVFGWLPGGNHLTVADVSSGPGTRPHGRHGSV
YWLSDAATSLHQDLGGGGSADAVPRLLGDRSRRDSLCGHLLLHLRDSASF
LDH
BO34241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFB-PA | 197 | CG33488-PA | 1..197 | 1..197 | 1068 | 100 | Plus |
