Clone BO34248 Report

Search the DGRC for BO34248

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:342
Well:48
Vector:pDNR-Dual
Associated Gene/Transcriptlbe-RA
Protein status:BO34248.pep: Imported from assembly
Sequenced Size:1471

Clone Sequence Records

BO34248.complete Sequence

1471 bp assembled on 2013-05-14

GenBank Submission: KX794604

> BO34248.complete
GAAGTTATCAGTCGACATGCTCTGCCCTCCAACCATGCGTCCGGCCAGTC
CCGCCGAATCCGAAATCTCCGTGGGCGGAGCCCCCAGCCCGCTGCCCACG
CAGCATCATACGCATCCGCACTCGCATCCTCATCCGCTGCAGCATCCGCG
GGCCAGCACCATTGATCTGCTGCAGCAGCAGCAGCTGCTGATGCAGCACC
ATGCCGCAGCAGCCGCCGCAGCAGCTGCAGCCGCCTCCGGACTCACCCGG
AGTGCCGTCGGCAATTTGCCGGAGGACTACTTCCATCCGCTGAAGCGCCT
GCGCATGTCCTCGTCCTCCTCGGAGCCACGAGACCACACGCCCAGTCCGC
CGTCAGCAGTTCCGGAGCCCCAGACCAACCAGACTACCAAGTCGGCCATC
GAGGGGGTTAAGAGCTTCTCCATCGCGGACATACTGGGTCACTCGGAGAA
GCAGCGCGAGGAGTCCGTTTCCCCGCCCCCAAATGCAAACCTCCTGGCTC
CACCTGCCTCCCGGCCCATTGCCCCCTCGGGCGGATTACTGCAGCCACGC
ACGGAACCGTTGGATGTCCACCCGGCCGCTGCTGCTGCCATGCTCCTGCC
AAGCGGACAGATTGTTCGGCCGTGGGATCACCTCCTGGGGCCGACCATGC
CCGTCCGCCCCTTCATCCCCTCCGCCCTGCTGCACTACGAGCAGCGCCTG
GCCCTGGACTACCATCGCCAGTTGCAGGAACACTTTAACGCCCAGGCCCA
GCTCCTTCGCCACATGGGCATGAATCCCGCGATCATCGCTTCCGAGGACG
GCAGCTCGGAGCGTTCCCAGCGATCGAGCAGCAGCAATGGCAGCACCGAA
TGCTGCAGCCCACGGCAGGCGGAAAAACTTGAAAAACTAACCACCCAAGA
GGGAAGTGAGGAAGCTCAGAAGAAGAAATCAGAGGAGCAGCCAACGGGTT
CAGGAAAGTCAAACGGAGACACTCCTCTGGATGCTCTCTTCCAGATGACC
ACAAAGGACTTTGACGAGTCGCAAGATAAATCCCACTTGGACATCTTCTC
GAACAGGCCGCAGCCGAAGAAGAAGCGCAAGTCGCGCACCGCCTTCACCA
ACCACCAGATCTTTGAGCTGGAGAAGCGGTTCCTCTACCAGAAGTACCTG
TCGCCAGCGGACCGCGATGAGATCGCCGCCTCACTGGGACTGTCCAACGC
CCAGGTGATCACCTGGTTCCAGAACCGGCGAGCCAAGCAGAAGCGGGACA
TCGAGGAGCTGAAGAAGGACTTCGATAGCGTCAAGGTCTTCTCCGCCCAC
AAGTCCTTCCTGGAGAACGTGAACGACCTAAGCATCCTCAAGAAGAAGCC
CATGCATGAGTCGGACATGGTGGGCCTGGCCGCTGCGGCAGCCGCTGCCG
GAATGGTGGTTCCCGTGCCTGGATCCGTGCCAATGGGAGGCGCTCCGCCC
AAAGCAAGCTTTCTAGACCAT

BO34248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
lbe-RA 1440 CG6545-PA 1..1437 17..1453 7005 99.2 Plus
lbl-RC 1233 CG6570-PC 366..948 685..1270 990 78.3 Plus
lbl-RA 1119 CG6570-PA 366..948 685..1270 990 78.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
lbe-RA 2277 CG6545-RA 445..1881 17..1453 7005 99.2 Plus
lbl-RC 1803 CG6570-RC 532..1114 685..1270 990 78.3 Plus
lbl-RA 1855 CG6570-RA 532..1114 685..1270 990 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21445081..21446093 1029..17 4975 99.4 Minus
3R 32079331 3R 21441973..21442402 1453..1024 2045 98.4 Minus
3R 32079331 3R 21433273..21433602 1017..685 565 78.7 Minus
3R 32079331 3R 21411070..21411211 1208..1067 410 85.9 Minus
Blast to na_te.dros performed on 2014-11-28 13:33:28 has no hits.

BO34248.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:49:54 Download gff for BO34248.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 228..1664 17..1455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:16 Download gff for BO34248.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 445..1881 17..1455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:35 Download gff for BO34248.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 445..1881 17..1455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:35 Download gff for BO34248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21441970..21442400 1026..1455 97 <- Minus
3R 21445085..21446093 17..1025 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:16 Download gff for BO34248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17267692..17268122 1026..1455 97 <- Minus
arm_3R 17270807..17271815 17..1025 99   Minus

BO34248.pep Sequence

Translation from 16 to 1471

> BO34248.pep
MLCPPTMRPASPAESEISVGGAPSPLPTQHHTHPHSHPHPLQHPRASTID
LLQQQQLLMQHHAAAAAAAAAAASGLTRSAVGNLPEDYFHPLKRLRMSSS
SSEPRDHTPSPPSAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREES
VSPPPNANLLAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIV
RPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHM
GMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEA
QKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQP
KKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITW
FQNRRAKQKRDIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESD
MVGLAAAAAAAGMVVPVPGSVPMGGAPPKASFLDH

BO34248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
lbe-PA 479 CG6545-PA 1..479 1..479 2483 100 Plus
lbl-PA 372 CG6570-PA 7..346 98..449 896 57.3 Plus
lbl-PC 410 CG6570-PC 7..322 98..424 833 57.1 Plus
lbl-PB 294 CG6570-PB 7..276 98..371 497 45.9 Plus
B-H2-PA 645 CG5488-PA 3..437 6..410 195 24.6 Plus