Clone BO34254 Report

Search the DGRC for BO34254

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:342
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG5050-RA
Protein status:BO34254.pep: Imported from assembly
Sequenced Size:1015

Clone Sequence Records

BO34254.complete Sequence

1015 bp assembled on 2013-05-14

GenBank Submission: KX797569

> BO34254.complete
GAAGTTATCAGTCGACATGGATAGACAAGGTGTTCATAATAGCTATGGGT
CAATAGCGAAAGACGCAATAGATGAGCAACGGATGGTGCTATCGATGCCA
CAACTGTCCATCCAGAGGAAATCCGTTACAAGCATGAAGTTATTCACCAT
GGTGGTGTTGCACTCGTGGCGCCAACGCCGAAAGGAGGTTCGTGAACTCA
AAGAGATGGTGCAACACCTCCAGGATAGCTCCATGAAGACCAAAAACGAA
CTGCACGTATGTGGCACATTGATGCGTGTGGAGGAAAAACGAAACAGGGA
ACTTCAAATAAAGCTTAAGCTATCGACGATGAGCATTGACCAAGTAAGGT
CCTCCTGTGAATCTCTTGTCAACTCGGTCCGTGACCTCACAACAGAGAAA
AGGCGATTGGAAACCGATTTGGAACAGCGCTTGCAGGAGTACAATGAGCT
GGAGGAAGTATCTGACAAAACCAAACGGCTGCTCTTCAGCGCCTACGTGG
AACAATCTAGCCTGCAAAAGCAACTAGCTGAGGAGCAGCGTACGACGCAG
AGATTGCAGGCGGAAAAGGACCAGCTAATCCAGGAAGTGATACTGGCGGA
GGGCAGAGATAACAAGTACCGCCAGGTGCGGGAATGGTACCAGCGTGTAC
TGCACAAAAAGGAGGTGTGCATTTACAACCTGGGAAGGAGATTGCATATG
CTGGAGGAGCAACTGTTTGACATTAATGAGCACACTGGAGAATTGGAACA
ATTGCGTGAGAGTGCTCAACAAATGTCGAACGAAATCACAGAGTTGCGCC
AGGAGATCAACCGAAATCGCAACGGTGTCTTCGGTGATTCCTGCTGTCGC
CTCGGACTCGGACGCCTCCACGACCATGTGATTGCGCCCTTTCAAGGCAA
CCATATCTGGATAAAACTTCGACGCTATTCCTTTAACGTGATATATTTGT
TTGCTTTGTATCTGCTGCCTGGAATGTCTCTCAAATATCGTCAAAACGCA
AGCTTTCTAGACCAT

BO34254.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5050-RB 984 CG5050-PB 1..981 17..997 4905 100 Plus
CG5050-RA 984 CG5050-PA 1..981 17..997 4905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5050-RB 1139 CG5050-RB 127..1107 17..997 4905 100 Plus
CG5050-RA 1314 CG5050-RA 302..1282 17..997 4905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17453882..17454174 438..730 1465 100 Plus
2L 23513712 2L 17458476..17458743 730..997 1340 100 Plus
2L 23513712 2L 17453225..17453437 17..229 1065 100 Plus
2L 23513712 2L 17453515..17453724 230..439 1050 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:33:42 has no hits.

BO34254.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:49:59 Download gff for BO34254.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 232..1212 17..999 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:23 Download gff for BO34254.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 302..1282 17..999 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:43 Download gff for BO34254.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 302..1282 17..999 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:43 Download gff for BO34254.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17453225..17453437 17..229 100 -> Plus
2L 17453515..17453724 230..439 100 -> Plus
2L 17453884..17454173 440..729 100 -> Plus
2L 17458476..17458743 730..999 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:23 Download gff for BO34254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17453225..17453437 17..229 100 -> Plus
arm_2L 17453515..17453724 230..439 100 -> Plus
arm_2L 17453884..17454173 440..729 100 -> Plus
arm_2L 17458476..17458743 730..999 99   Plus

BO34254.pep Sequence

Translation from 16 to 1015

> BO34254.pep
MDRQGVHNSYGSIAKDAIDEQRMVLSMPQLSIQRKSVTSMKLFTMVVLHS
WRQRRKEVRELKEMVQHLQDSSMKTKNELHVCGTLMRVEEKRNRELQIKL
KLSTMSIDQVRSSCESLVNSVRDLTTEKRRLETDLEQRLQEYNELEEVSD
KTKRLLFSAYVEQSSLQKQLAEEQRTTQRLQAEKDQLIQEVILAEGRDNK
YRQVREWYQRVLHKKEVCIYNLGRRLHMLEEQLFDINEHTGELEQLRESA
QQMSNEITELRQEINRNRNGVFGDSCCRLGLGRLHDHVIAPFQGNHIWIK
LRRYSFNVIYLFALYLLPGMSLKYRQNASFLDH

BO34254.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5050-PB 327 CG5050-PB 1..327 1..327 1666 100 Plus
CG5050-PA 327 CG5050-PA 1..327 1..327 1666 100 Plus
CG5043-PA 499 CG5043-PA 198..358 33..193 236 31.1 Plus