BO34254.complete Sequence
1015 bp assembled on 2013-05-14
GenBank Submission: KX797569
> BO34254.complete
GAAGTTATCAGTCGACATGGATAGACAAGGTGTTCATAATAGCTATGGGT
CAATAGCGAAAGACGCAATAGATGAGCAACGGATGGTGCTATCGATGCCA
CAACTGTCCATCCAGAGGAAATCCGTTACAAGCATGAAGTTATTCACCAT
GGTGGTGTTGCACTCGTGGCGCCAACGCCGAAAGGAGGTTCGTGAACTCA
AAGAGATGGTGCAACACCTCCAGGATAGCTCCATGAAGACCAAAAACGAA
CTGCACGTATGTGGCACATTGATGCGTGTGGAGGAAAAACGAAACAGGGA
ACTTCAAATAAAGCTTAAGCTATCGACGATGAGCATTGACCAAGTAAGGT
CCTCCTGTGAATCTCTTGTCAACTCGGTCCGTGACCTCACAACAGAGAAA
AGGCGATTGGAAACCGATTTGGAACAGCGCTTGCAGGAGTACAATGAGCT
GGAGGAAGTATCTGACAAAACCAAACGGCTGCTCTTCAGCGCCTACGTGG
AACAATCTAGCCTGCAAAAGCAACTAGCTGAGGAGCAGCGTACGACGCAG
AGATTGCAGGCGGAAAAGGACCAGCTAATCCAGGAAGTGATACTGGCGGA
GGGCAGAGATAACAAGTACCGCCAGGTGCGGGAATGGTACCAGCGTGTAC
TGCACAAAAAGGAGGTGTGCATTTACAACCTGGGAAGGAGATTGCATATG
CTGGAGGAGCAACTGTTTGACATTAATGAGCACACTGGAGAATTGGAACA
ATTGCGTGAGAGTGCTCAACAAATGTCGAACGAAATCACAGAGTTGCGCC
AGGAGATCAACCGAAATCGCAACGGTGTCTTCGGTGATTCCTGCTGTCGC
CTCGGACTCGGACGCCTCCACGACCATGTGATTGCGCCCTTTCAAGGCAA
CCATATCTGGATAAAACTTCGACGCTATTCCTTTAACGTGATATATTTGT
TTGCTTTGTATCTGCTGCCTGGAATGTCTCTCAAATATCGTCAAAACGCA
AGCTTTCTAGACCAT
BO34254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5050-RB | 984 | CG5050-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
CG5050-RA | 984 | CG5050-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5050-RB | 1139 | CG5050-RB | 127..1107 | 17..997 | 4905 | 100 | Plus |
CG5050-RA | 1314 | CG5050-RA | 302..1282 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17453882..17454174 | 438..730 | 1465 | 100 | Plus |
2L | 23513712 | 2L | 17458476..17458743 | 730..997 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 17453225..17453437 | 17..229 | 1065 | 100 | Plus |
2L | 23513712 | 2L | 17453515..17453724 | 230..439 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:33:42 has no hits.
BO34254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:49:59 Download gff for
BO34254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5050-RA | 232..1212 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:23 Download gff for
BO34254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5050-RA | 302..1282 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:43 Download gff for
BO34254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5050-RA | 302..1282 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:43 Download gff for
BO34254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17453225..17453437 | 17..229 | 100 | -> | Plus |
2L | 17453515..17453724 | 230..439 | 100 | -> | Plus |
2L | 17453884..17454173 | 440..729 | 100 | -> | Plus |
2L | 17458476..17458743 | 730..999 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:23 Download gff for
BO34254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17453225..17453437 | 17..229 | 100 | -> | Plus |
arm_2L | 17453515..17453724 | 230..439 | 100 | -> | Plus |
arm_2L | 17453884..17454173 | 440..729 | 100 | -> | Plus |
arm_2L | 17458476..17458743 | 730..999 | 99 | | Plus |
BO34254.pep Sequence
Translation from 16 to 1015
> BO34254.pep
MDRQGVHNSYGSIAKDAIDEQRMVLSMPQLSIQRKSVTSMKLFTMVVLHS
WRQRRKEVRELKEMVQHLQDSSMKTKNELHVCGTLMRVEEKRNRELQIKL
KLSTMSIDQVRSSCESLVNSVRDLTTEKRRLETDLEQRLQEYNELEEVSD
KTKRLLFSAYVEQSSLQKQLAEEQRTTQRLQAEKDQLIQEVILAEGRDNK
YRQVREWYQRVLHKKEVCIYNLGRRLHMLEEQLFDINEHTGELEQLRESA
QQMSNEITELRQEINRNRNGVFGDSCCRLGLGRLHDHVIAPFQGNHIWIK
LRRYSFNVIYLFALYLLPGMSLKYRQNASFLDH
BO34254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5050-PB | 327 | CG5050-PB | 1..327 | 1..327 | 1666 | 100 | Plus |
CG5050-PA | 327 | CG5050-PA | 1..327 | 1..327 | 1666 | 100 | Plus |
CG5043-PA | 499 | CG5043-PA | 198..358 | 33..193 | 236 | 31.1 | Plus |