BO34262.complete Sequence
1054 bp assembled on 2013-05-14
GenBank Submission: KX799562
> BO34262.complete
GAAGTTATCAGTCGACATGGGCAACGTAATGGCGTCCACCGCAGACGCTG
AGTCCTCTCGTGGGCGTGGACATCTGTCCGCCGGACTACGCTTGCCGGAG
GCACCGCAGTATTCCGGCGGAGTGCCGCCACAGATGGTGGAGGCCTTAAA
GGCGGAAGCTAAAAAGCCCGAATTGACAAATCCCGGAACTCTTGAGGAAC
TGCACAGTCGCTGTCGCGACATCCAGGCCAACACCTTCGAAGGCGCCAAA
ATTATGGTGAACAAGGGTCTGAGCAACCACTTCCAAGTGACCCACACCAT
TAACATGAATTCGGCTGGTCCAAGTGGCTATCGTTTTGGAGCTACCTACG
TGGGTACCAAACAATACGGGCCGACTGAAGCCTTTCCGGTTCTTCTTGGC
GAGATCGATCCGATGGGCAATCTTAATGCAAACGTTATCCATCAACTGAC
CTCTCGTTTGAGGTGCAAGTTTGCCTCGCAGTTCCAGGACTCAAAGCTGG
TGGGCACCCAGCTGACGGGGGACTATCGCGGCAGAGACTACACGCTGACC
CTGACAATGGGCAATCCGGGGTTTTTTACGAGTTCCGGAGTATTTGTGTG
CCAGTACTTGCAGTCCGTCACCAAACGTCTGGCGCTAGGATCGGAGTTCG
CCTATCACTACGGGCCGAATGTGCCCGGACGCCAAGTGGCTGTATTATCA
GCGGTGGGACGTTACGCCTTCGGTGATACCGTGTGGTCTTGCACTTTGGG
ACCCGCCGGATTCCACCTTAGTTACTACCAGAAGGCCAGTGATCAGCTAC
AGATCGGAGTCGAGGTGGAAACGAATATCCGCCAGCAAGAGTCGACGGCC
ACGGTGGCATACCAGATTGATCTGCCCAAGGCAGACCTAGTCTTCCGCGG
CAGTCTCGATTCCAATTGGCTTATTTCCGGAGTCCTTGAGAAAAGACTGC
AGCCGCTACCGTTCTCGTTAGCCATTAGCGGTCGTATGAATCACCAAAAA
AATAGTTTTCGGCTGGGATGTGGCCTCATGATAGGAGCAAGCTTTCTAGA
CCAT
BO34262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tomboy40-RA | 1023 | CG8330-PA | 1..1020 | 17..1036 | 5085 | 99.9 | Plus |
Tom40-RC | 1035 | CG12157-PC | 217..916 | 221..920 | 560 | 72 | Plus |
Tom40-RB | 1035 | CG12157-PB | 217..916 | 221..920 | 560 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tomboy40-RA | 1251 | CG8330-RA | 92..1111 | 17..1036 | 5085 | 99.9 | Plus |
Tom40-RC | 2395 | CG12157-RC | 639..1338 | 221..920 | 560 | 72 | Plus |
Tom40-RB | 1861 | CG12157-RB | 511..1210 | 221..920 | 560 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6225725..6226744 | 17..1036 | 5085 | 99.9 | Plus |
X | 23542271 | X | 7737875..7738098 | 221..444 | 400 | 78.6 | Plus |
X | 23542271 | X | 7738673..7738795 | 773..895 | 225 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:33:46 has no hits.
BO34262.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:50:00 Download gff for
BO34262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tomboy40-RA | 99..1118 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:24 Download gff for
BO34262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tomboy40-RA | 92..1111 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:43 Download gff for
BO34262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tomboy40-RA | 92..1111 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:43 Download gff for
BO34262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6225725..6226744 | 17..1038 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:24 Download gff for
BO34262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2113230..2114249 | 17..1038 | 99 | | Plus |
BO34262.pep Sequence
Translation from 16 to 1054
> BO34262.pep
MGNVMASTADAESSRGRGHLSAGLRLPEAPQYSGGVPPQMVEALKAEAKK
PELTNPGTLEELHSRCRDIQANTFEGAKIMVNKGLSNHFQVTHTINMNSA
GPSGYRFGATYVGTKQYGPTEAFPVLLGEIDPMGNLNANVIHQLTSRLRC
KFASQFQDSKLVGTQLTGDYRGRDYTLTLTMGNPGFFTSSGVFVCQYLQS
VTKRLALGSEFAYHYGPNVPGRQVAVLSAVGRYAFGDTVWSCTLGPAGFH
LSYYQKASDQLQIGVEVETNIRQQESTATVAYQIDLPKADLVFRGSLDSN
WLISGVLEKRLQPLPFSLAISGRMNHQKNSFRLGCGLMIGASFLDH
BO34262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tomboy40-PA | 340 | CG8330-PA | 1..340 | 1..340 | 1774 | 100 | Plus |
Tom40-PC | 344 | CG12157-PC | 1..344 | 1..340 | 1211 | 68.7 | Plus |
Tom40-PB | 344 | CG12157-PB | 1..344 | 1..340 | 1211 | 68.7 | Plus |
Tom40-PA | 344 | CG12157-PA | 1..344 | 1..340 | 1211 | 68.7 | Plus |
CG4520-PB | 320 | CG4520-PB | 33..316 | 55..344 | 182 | 23.7 | Plus |