BO34279.complete Sequence
967 bp assembled on 2013-05-14
GenBank Submission: KX795470
> BO34279.complete
GAAGTTATCAGTCGACATGAAACTGACCGCTTTCCTCGAGGCTTCGTTTC
TGCTAATCTGCTGGTCTCAAGCTGTCAGCAGCCATGTCTTTGGCTACTCC
GAGCCCAACCAGCGACGCTGGGCCCGCCATCATGGTCACTGTGCGGGAAA
GACCCAGTCCCCGATTGCCATCACCACCAGCCGGACAACGGCCATTCATA
TGCCGGCGGTGGACATGATTGGCTATCACAACCTGCTGCCCTACCCACTG
AAAATGATCAACAATGGACACACGGTTTCCATCACCATACCTAAGGTCAA
TGTGACTGAGGTGGGCGAGGATTTCCTACCCTACATCCGGGGCGCCAAGC
TGCCCGGTGAGTTCGAGGTGGAGGGCCTCCACTTCCACTGGGGCGACAAG
AACAACCGGGGATCCGAGCATGTCATTAACGACATCCGCTACACCATGGA
GATGCACATTGTGCACCGGAACAAGAAGTACGCAACCATTGGCGAGGCTC
TTAATCATCCGGATGGTGCCGCCGTCCTGGGTTTCTTCTTCAATCTCGAC
GAGGATGAGGGTGCTGGCCTGGTGACCATTAACCGACATTTGCATCTGAT
TGCCGATGCCAATCAGGAGGCCACGCTGAACGTCACTTTCTCGCTCTCCT
CGCTGATTGCTGGCGTGGATGTGGACAAGTTCTACACGTACAAGGGTTCC
CTGACCACGCCGCCCTGTTCGGAGGCCGTCACCTGGATACTGTTTCCCGA
TCCCATACCCATTTCACCCAAGCAGATCTCCCGATTCCGTCAGCTGTCGG
ACACGCAGGATGGTGCGTTGGTGGACAATTTCAGGACCCTGCAGCCGGTG
GGCAATCGCAGGATCTTCGCGCGCACTGGACACGTGCGTCACACCTCGAT
TGCCACATTGAAGCACGAGGGCGAATATCTCAAGTACGACTGGTTCTACG
CAAGCTTTCTAGACCAT
BO34279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6074-RA | 936 | CG6074-PA | 1..933 | 17..949 | 4620 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6074-RA | 1130 | CG6074-RA | 60..994 | 15..949 | 4630 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27103793..27104062 | 544..275 | 1320 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27103124..27103378 | 949..695 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 27103575..27103727 | 697..545 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 27104314..27104428 | 184..70 | 560 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27104156..27104247 | 275..184 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 27106069..27106125 | 71..15 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:36:29 has no hits.
BO34279.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-14 17:51:01 Download gff for
BO34279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6074-RA | 62..994 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:53 Download gff for
BO34279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6074-RA | 62..994 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:54 Download gff for
BO34279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6074-RA | 62..994 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:54 Download gff for
BO34279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27103793..27104061 | 276..544 | 99 | <- | Minus |
| 3R | 27104156..27104246 | 185..275 | 100 | <- | Minus |
| 3R | 27104314..27104426 | 72..184 | 99 | <- | Minus |
| 3R | 27106069..27106123 | 17..71 | 100 | | Minus |
| 3R | 27103121..27103377 | 696..951 | 99 | <- | Minus |
| 3R | 27103577..27103727 | 545..695 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:53 Download gff for
BO34279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22928843..22929099 | 696..951 | 99 | <- | Minus |
| arm_3R | 22929299..22929449 | 545..695 | 100 | <- | Minus |
| arm_3R | 22929515..22929783 | 276..544 | 99 | <- | Minus |
| arm_3R | 22929878..22929968 | 185..275 | 100 | <- | Minus |
| arm_3R | 22930036..22930148 | 72..184 | 99 | <- | Minus |
| arm_3R | 22931791..22931845 | 17..71 | 100 | | Minus |
BO34279.pep Sequence
Translation from 16 to 967
> BO34279.pep
MKLTAFLEASFLLICWSQAVSSHVFGYSEPNQRRWARHHGHCAGKTQSPI
AITTSRTTAIHMPAVDMIGYHNLLPYPLKMINNGHTVSITIPKVNVTEVG
EDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHIVH
RNKKYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQ
EATLNVTFSLSSLIAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPIS
PKQISRFRQLSDTQDGALVDNFRTLQPVGNRRIFARTGHVRHTSIATLKH
EGEYLKYDWFYASFLDH
BO34279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6074-PA | 311 | CG6074-PA | 1..311 | 1..311 | 1667 | 100 | Plus |
| CG18673-PC | 302 | CG18673-PC | 54..300 | 40..287 | 485 | 40.1 | Plus |
| CG3669-PB | 298 | CG3669-PB | 33..288 | 29..288 | 473 | 37.5 | Plus |
| CG5379-PB | 303 | CG5379-PB | 6..286 | 3..286 | 457 | 36.1 | Plus |
| CG5379-PA | 303 | CG5379-PA | 6..286 | 3..286 | 457 | 36.1 | Plus |
