BO34284.complete Sequence
2935 bp assembled on 2013-10-22
GenBank Submission: KX797656
> BO34284.complete
GAAGTTATCAGTCGACATGAATCGCACCGACGACATGAAGAATGCCTCGC
TGAACGACTACAAGCTGGAAGCGATGGCCTCCGTCGGCTGGGCGGTGGAC
TCGGACATTCCAATGGCGAGTGCCGAGAACTTGGCCATCCTAAAGGAACT
GACTGCTCTGCGGGCGTTGAAGCTGGAGCTGCAGCAGCACATGAACTCGC
TGGATGAGCGCGAGATGGCGGTGGAACGACATACCCGCAACATTGAGGGC
ACTATTCAGCAGAACCTGACACTGTACAGCTCCCTGAAGGATGATGTTAT
CAAGGAGGCGCACAACGTCCAGCTTGTGATCTTGGAGCGCAACAAGATCA
AGGAGGATCTGCGGAAGAATAACAAGGAGCTGGAGGAGTACACTGAATAT
GTCAAAGTCACTGAGCGAAAGATTTGCCAGAGCAAGCGCGAGATAGATGA
GCTGACTTCCCGCATCAAGTCGGCTAAGACTACCTTGGTGGAGTGGACAG
AGGCCATGGAAGACGGAAACAAGGGCTACCAGCTAATCGAAAAGTACTAC
CTCGATGACCAGCAAAAGGCACGGGAGCTGAACATTAAGCGTCAGCTCTT
GCAGGCGGACATCGACAAGCGGCGCAAGCAGGTGGTGCTCCTCTATGACG
AGCAAATGACGCTGGAGAAGAATCTGGAGCGAACCGCTTGTCTGTACAGG
TCTGCCCACGCGGAACGCCGCCAGATGGTGGAGACGTGGAAGAGCGCCGT
GAACCAGATGACCCAGCGAGAGCACGACATTCAGCGCAGCGAGATAGAGT
GTGCGGAGCTGGCCCAGAAAGCCCAGCAGACGGCTCAGACCTACAAGGAG
TACGACAACCAGCTAACCGAGGTCATCGAGAACAACCGCCAGGTGGAGCT
CGCGATCGAGTCCCTCAACGAGGAAAGCTCCGACATGAAAAACCAAATCC
AGATCCTGATTGATGCCACATTACTGAAGGAGCGCGAGATCGACGGACTG
CGTCGGGAACTGGAGAACCTTTCGAACCGGGTTCACCTGCAGCGCATGGA
TAACCGTAGTCAGATGAAAAAGCGCGATGAGAAGGCCAAGGAGCTGGAGA
ACTTCGCTTCGGTGATGGAGAAGGTTAACGCTCGGCTGAAGTCTGTACAG
AACAAGGCCCTCAATGCGGAGCAGCGGCTGCAAATTCTGGAGGAGATGAT
GCAGGCGGAGGAGACGGCTCTGCGAAACCTGGACAAGGAGCAGGAGAAGG
TCAACGAGATGTTGTACCGCACCCAGAGGCAGGTCATCGAGCTGCAGGAC
GAGGAGAAGGTCTTGAAGGTGCAGAACGACTCGCTCAACTCCAACCTGGC
AGCGATCAATCGCAATCAGCAGCAGGTCAATAACGAACTCAAGCGGCAGA
CGGAGATCCATTACAGCCTGTCCTTTAAGTGCTTGGAGGCGGAGCGGCGT
CTCGCCGAGATCAAGGGTCTGGCAGATGACCCCGAGGTAGAGGCCACAAA
CATGGCCCGGCTTAACACTCTGGAGCAGGAGTATGAAAAGTTGCAACGCC
TCATCGCCACCACGGAGGCGCAGAATAAGAAGCTAAACTATAACATGAAC
AACCTGGTCGTCCAGTACAACGCCGACGAGAAGGAGCTCGAAATGGTCAG
GTTCAAGATTAAAGAGGCCCAGGTGTACTGCGAGGGCACCGTCAAGAGAC
TGCGCCAGATTCGATACGAGAATTCCGAGCTCATAGTCGACCTCAACATG
GTCAAGATGCGCTGCAGCGACCTAGAGGTTGGCATCGGAGGCTGCGAGCA
GGGCACCTACGACCTAGAGCAGCACCGCCTTGCCTTCCGGCGCGCCATCA
AAGATCGCACCGTTGAGCTTCGCAGCCAAGAGGATGTGCTCCTCCTCAAG
AAGAAGCATCTTAACGAGGAACTAAGCACCCTGCGAGCCGACCTCGGGGA
GCGGAAGAAGCAGATTGAGGCGATGAAGGCGCGCTTTGAACTTACCGCCC
AATTGCTAGGCAAAAACGAGGACGGCTCCATCATGACCAGCACACAGCTG
AAGGTGGTGAGCGCCCAGGAACGGCAGATGCTGGCCGACGAGGGCGATGC
CCTCAACAAAAAGGTTCTCAAGGCTGAGAAGGAAGTGGTCGCCCTGGAAA
ACACACTGCGCCAGTTCGACAAATCGAACGATAACTACCGAAAAACATTC
CGATCTGTGGACGAAAACTCAAAGGATCGCGAGCGGGCCGAACTGGAGCT
GAAGGAACTTGAGGCGGCCTACTGCCGCGAGCTGGAAAAACTGAAGGTTC
TCAGGTGCAAGGCACAGCACTACCAGCAGAAGCACGCAGCCCAGCGAGCT
GAGGAGGAAGACCTGATTTCCAAAATAGAGAAGGCGAAGGCTAGTCGGGC
GGAGCACTCTGCAGTTCTGGAGAAGATCGAGCGCGAACTAGATGACCAGC
GAATGAAGCTGGACAGGGCCAATCGAGAGATCCGGACACAGTTGCGGGAG
ATCAAGGCGCGGCCCTTTAGCGAGGAGTACCTGGCGCAGTTCGAGCGGGA
TCTGTCTCTACAGGAGCTGGAGGCGCGTAACACCAAGGCGCTGAACATGA
TCACCGATCTGGCGAACAGCGACGAGAGCGGCACGGATATAATTGGAATC
CTCTTGCGAAAAGGAATCAAGTTGCCGATGCACCTGAAGCGCACGTGCAG
CCGCGTGTCCTGGAACAGCAGCTCCTCGGGCAAGTCCTCGCAGGGTCAGG
ACACCGCCTCCTACCTCAATGTTAAGGGCAAGAAGTTCTCCTGCGACGGG
GCTAGTGCCCGGTCCTCCGTCTCCGACATGAGCTCCCTTAAGGATGACAC
ATCCTCCACAACCTCCCACTCCGGACTGAGCATCATATCGCTTGAGTTGC
CCTTGCCGAAGAAAAAAGCAAGCTTTCTAGACCAT
BO34284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17387-RA | 2904 | CG17387-PA | 1..2901 | 17..2917 | 14505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17387-RA | 3093 | CG17387-RA | 39..2939 | 17..2917 | 14505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4782287..4784095 | 2225..417 | 9045 | 100 | Minus |
| 3R | 32079331 | 3R | 4781274..4781966 | 2917..2225 | 3465 | 100 | Minus |
| 3R | 32079331 | 3R | 4784433..4784684 | 268..17 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 4784222..4784375 | 421..268 | 755 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:08:43 has no hits.
BO34284.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-22 15:06:04 Download gff for
BO34284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17387-RA | 39..2930 | 17..2908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:05 Download gff for
BO34284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17387-RA | 39..2930 | 17..2908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:05 Download gff for
BO34284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4781283..4781965 | 2226..2908 | 100 | <- | Minus |
| 3R | 4782287..4784095 | 417..2225 | 100 | <- | Minus |
| 3R | 4784227..4784374 | 269..416 | 100 | <- | Minus |
| 3R | 4784433..4784684 | 17..268 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-22 15:06:04 Download gff for
BO34284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 607005..607687 | 2226..2908 | 100 | <- | Minus |
| arm_3R | 608009..609817 | 417..2225 | 100 | <- | Minus |
| arm_3R | 609949..610096 | 269..416 | 100 | <- | Minus |
| arm_3R | 610155..610406 | 17..268 | 100 | | Minus |
BO34284.pep Sequence
Translation from 16 to 2935
> BO34284.pep
MNRTDDMKNASLNDYKLEAMASVGWAVDSDIPMASAENLAILKELTALRA
LKLELQQHMNSLDEREMAVERHTRNIEGTIQQNLTLYSSLKDDVIKEAHN
VQLVILERNKIKEDLRKNNKELEEYTEYVKVTERKICQSKREIDELTSRI
KSAKTTLVEWTEAMEDGNKGYQLIEKYYLDDQQKARELNIKRQLLQADID
KRRKQVVLLYDEQMTLEKNLERTACLYRSAHAERRQMVETWKSAVNQMTQ
REHDIQRSEIECAELAQKAQQTAQTYKEYDNQLTEVIENNRQVELAIESL
NEESSDMKNQIQILIDATLLKEREIDGLRRELENLSNRVHLQRMDNRSQM
KKRDEKAKELENFASVMEKVNARLKSVQNKALNAEQRLQILEEMMQAEET
ALRNLDKEQEKVNEMLYRTQRQVIELQDEEKVLKVQNDSLNSNLAAINRN
QQQVNNELKRQTEIHYSLSFKCLEAERRLAEIKGLADDPEVEATNMARLN
TLEQEYEKLQRLIATTEAQNKKLNYNMNNLVVQYNADEKELEMVRFKIKE
AQVYCEGTVKRLRQIRYENSELIVDLNMVKMRCSDLEVGIGGCEQGTYDL
EQHRLAFRRAIKDRTVELRSQEDVLLLKKKHLNEELSTLRADLGERKKQI
EAMKARFELTAQLLGKNEDGSIMTSTQLKVVSAQERQMLADEGDALNKKV
LKAEKEVVALENTLRQFDKSNDNYRKTFRSVDENSKDRERAELELKELEA
AYCRELEKLKVLRCKAQHYQQKHAAQRAEEEDLISKIEKAKASRAEHSAV
LEKIERELDDQRMKLDRANREIRTQLREIKARPFSEEYLAQFERDLSLQE
LEARNTKALNMITDLANSDESGTDIIGILLRKGIKLPMHLKRTCSRVSWN
SSSSGKSSQGQDTASYLNVKGKKFSCDGASARSSVSDMSSLKDDTSSTTS
HSGLSIISLELPLPKKKASFLDH
BO34284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17387-PA | 967 | CG17387-PA | 1..967 | 1..967 | 4809 | 100 | Plus |
| brp-PL | 1781 | CG42344-PL | 508..1377 | 6..860 | 272 | 18.8 | Plus |
| brp-PI | 1397 | CG42344-PI | 187..993 | 6..860 | 264 | 20.2 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 168..931 | 114..870 | 259 | 20.1 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 770..1444 | 54..744 | 253 | 19.5 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 285..1163 | 54..870 | 244 | 18.2 | Plus |
| brp-PL | 1781 | CG42344-PL | 345..1207 | 41..850 | 243 | 20.2 | Plus |
| brp-PL | 1781 | CG42344-PL | 255..1050 | 172..858 | 215 | 19.9 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 526..1323 | 4..831 | 197 | 19.1 | Plus |
| brp-PL | 1781 | CG42344-PL | 710..1603 | 28..875 | 196 | 18.2 | Plus |
| brp-PI | 1397 | CG42344-PI | 389..1219 | 28..875 | 193 | 20 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 702..1442 | 34..756 | 172 | 19.2 | Plus |
| brp-PL | 1781 | CG42344-PL | 1196..1770 | 41..623 | 165 | 17 | Plus |
| brp-PI | 1397 | CG42344-PI | 812..1386 | 41..623 | 165 | 17 | Plus |
