BO34296.complete Sequence
2140 bp assembled on 2014-03-03
GenBank Submission: KX798221
> BO34296.complete
GAAGTTATCAGTCGACATGCGCTCACTTGAAGGCAGCCGTCGTCGACAGG
TCGAGCAGCTGCATCTGGTTCTGGAAGCGAAGGATCAGGATCAGGAGCTC
AATACCCGACAAGAGCAGGAGCAGTCAGTCGCACGGCCATCGATGGCCAA
CGAACGCAAGCAGAGCAGTCCCAAGGTGGAGCTAACAAAGCTCAGTCACG
ACCTGATCGAGGAATGTAAACGCAGCCAGGAGGACTCGCTGCTGTCGCGC
CACCTGCGCCACGAACTAGAAAAGCTACCCCGCGATTCTCGTCGCGAGTT
GGTGCGAAAGCAGCGAAATGGCTGCGCGCCCCTCTTTATCGCCTGCAAAC
GAGGTGCCGTGGACATCGCTGAGTATCTGATCACCATTTGCGAGGCGAAC
ATCGAGCAGAGGGGCCACTTCGAGGTGCCGGAGGACAATAGCTTTCACTA
TGTGTCGCCACTATGGGCGGCCGTCGTTTCGGGGAAGTTGTCCATGGTCA
AGTACCTGGTACGTATCGGTTGCGACATCAATGCCACATCCGATTCGGGA
TCGACGCCGGTGCGAAGTGCTTGCTACATGACCCACGTTGATATCGTCAA
GTTCCTGGTTGAAAACGGAGCAGACATCAAGCGACCCAACATCAATGGCG
GCACCTGCCTGATTAACTCGGTGCAGTCGGTGCAGTTGTGCTTGTATCTA
GTGCGCAAGGGAGCAGACATTAATGCAAGGGACATTCAGGACAAGACGGC
GCTTCACTACGCAATCCAGGAGCACCGACTGGATACGACTAAACTGTTAA
TTGAGCAAGGCGCAGACCCATATGCCAGGAGTCGGTACGGTGACGATGCC
CTTCGAACTGCCTGCCTTAAGGGAGCACATCACATCTTCGACTTCTTGAA
AAAGCAGCTGCACTACACGCCTGCAAGGCTCGCAGAAGCCCACGAGCTGA
TGGGATCGACGTTCCTCGATGAGCACAACGAGTCGAGGGTGTGCATCCTG
CACTGGCGCATGGCGCACCACATCCGGGCAGCTTATTCACCGTATATAGA
GAAAAAGCCGCAGGTTCCTTTGCGCACTGCTTACGAGAATGCAGTGGAGT
TTAGTACGCTGGAGGAGCTGGATAACATTGCCACCGACATGGATGCAATG
CGGACGCAGAGCCTACTTATTTGCGAGCGTGTTCTGGGACTGACCCATAA
GGATATGCTCTTCCGCTTAACTTTCAGGGGTGCTTCGTATGCGGACTCAC
TCCAGCTGCAACGCTGCATTGATCTGTGGCGTTTTCTGCTCGAAGTGCGC
GTATCCAACTGGTCTATCCTGCATTTTGAAACTTGTTTTGCGGCACAGGC
GCTGGTGCGTTTAATGTTGGACTTGCATGTCCAGAACTCAAGTCATATAA
GAAGCGATGCCAGAGCAAGGTTTGTCCATCAGGATAAAGTGCTGCCCAGG
TTCGAGGATGTGCTTGGTGTATTTCGAACACTGTCGGAAAGCGCCATTGT
CGTGAAGCATCTGCTGCTCTTGAGGCCTGTTTTCAGGAGACAGCAGGAGA
ATTACGACCGGGTGATGAGGTGCTTGGCTCACCTTATCTATTTGCTGATC
AATACCGTCCACACGGAGGCGCAGAACAAACTCATCTGCCAGGCGGTCCA
CGAAGCGGTGGTGGTGGGAAACTTGCGAAGTGCCAGCACCGCCGACACCA
TGCTCCATCTCTGCGCCTCTCGGCTAAATGTAATTAAGAGCGGCTACATC
ACTGATGACAACTTTGCCGATAAGACTGTGTTCCCCAATGCGGATGTCAT
CAAACTGCTCATCCAGTGCGGCGTCGATGTCAACACAAAGAACGAAGCCA
AATCCACTCCACTGCATGTGGCCTGCCAGCCATACAACTATGACAATGAG
ATTGTTCACCTTTTGCTCAAGTGCGGAGGTGACATCGATCAGCCGAATCG
CGCTGACAAGCGGCCCTACGACTTAATAGCCTCCAATCCCACCAGCACCA
TTCCACTGCTCAACTTTGTAACCCTGCAGTGTTTGGCGGCCACGGCGATA
AGCAAACACCGGATACCCTACCACAATCAGCTGCACAGGCAGCTCGAGAA
GTTCGTGCGAAACCACGAACCGGCAAGCTTTCTAGACCAT
BO34296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| m-cup-RA | 2109 | CG11896-PA | 1..2106 | 17..2122 | 10290 | 99.2 | Plus |
| m-cup-RB | 2106 | CG11896-PB | 1..2103 | 17..2122 | 10210 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| m-cup-RA | 2815 | CG11896-RA | 519..2624 | 17..2122 | 10290 | 99.2 | Plus |
| m-cup-RB | 3789 | CG11896-RB | 519..2621 | 17..2122 | 10210 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17146720..17147352 | 1228..596 | 3030 | 98.6 | Minus |
| 3R | 32079331 | 3R | 17146120..17146668 | 1771..1223 | 2745 | 100 | Minus |
| 3R | 32079331 | 3R | 17147415..17147737 | 596..274 | 1555 | 98.8 | Minus |
| 3R | 32079331 | 3R | 17148637..17148894 | 274..17 | 1275 | 99.6 | Minus |
| 3R | 32079331 | 3R | 17145643..17145866 | 2122..1899 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 17145927..17146055 | 1900..1772 | 615 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:59:06 has no hits.
BO34296.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:55 Download gff for
BO34296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-cup-RA | 519..2624 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:30 Download gff for
BO34296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-cup-RA | 519..2624 | 17..2124 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:30 Download gff for
BO34296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17148638..17148894 | 17..273 | 99 | | Minus |
| 3R | 17145641..17145864 | 1901..2124 | 99 | <- | Minus |
| 3R | 17145927..17146055 | 1772..1900 | 98 | <- | Minus |
| 3R | 17146120..17146663 | 1228..1771 | 100 | <- | Minus |
| 3R | 17146721..17147351 | 597..1227 | 98 | <- | Minus |
| 3R | 17147415..17147737 | 274..596 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:55 Download gff for
BO34296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12971363..12971586 | 1901..2124 | 99 | <- | Minus |
| arm_3R | 12971649..12971777 | 1772..1900 | 98 | <- | Minus |
| arm_3R | 12971842..12972385 | 1228..1771 | 100 | <- | Minus |
| arm_3R | 12972443..12973073 | 597..1227 | 98 | <- | Minus |
| arm_3R | 12973137..12973459 | 274..596 | 98 | <- | Minus |
| arm_3R | 12974360..12974616 | 17..273 | 99 | | Minus |
BO34296.pep Sequence
Translation from 16 to 2140
> BO34296.pep
MRSLEGSRRRQVEQLHLVLEAKDQDQELNTRQEQEQSVARPSMANERKQS
SPKVELTKLSHDLIEECKRSQEDSLLSRHLRHELEKLPRDSRRELVRKQR
NGCAPLFIACKRGAVDIAEYLITICEANIEQRGHFEVPEDNSFHYVSPLW
AAVVSGKLSMVKYLVRIGCDINATSDSGSTPVRSACYMTHVDIVKFLVEN
GADIKRPNINGGTCLINSVQSVQLCLYLVRKGADINARDIQDKTALHYAI
QEHRLDTTKLLIEQGADPYARSRYGDDALRTACLKGAHHIFDFLKKQLHY
TPARLAEAHELMGSTFLDEHNESRVCILHWRMAHHIRAAYSPYIEKKPQV
PLRTAYENAVEFSTLEELDNIATDMDAMRTQSLLICERVLGLTHKDMLFR
LTFRGASYADSLQLQRCIDLWRFLLEVRVSNWSILHFETCFAAQALVRLM
LDLHVQNSSHIRSDARARFVHQDKVLPRFEDVLGVFRTLSESAIVVKHLL
LLRPVFRRQQENYDRVMRCLAHLIYLLINTVHTEAQNKLICQAVHEAVVV
GNLRSASTADTMLHLCASRLNVIKSGYITDDNFADKTVFPNADVIKLLIQ
CGVDVNTKNEAKSTPLHVACQPYNYDNEIVHLLLKCGGDIDQPNRADKRP
YDLIASNPTSTIPLLNFVTLQCLAATAISKHRIPYHNQLHRQLEKFVRNH
EPASFLDH
BO34296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| m-cup-PA | 702 | CG11896-PA | 1..702 | 1..702 | 3647 | 100 | Plus |
| m-cup-PB | 701 | CG11896-PB | 1..701 | 1..702 | 3630 | 99.9 | Plus |
| CG6966-PC | 664 | CG6966-PC | 34..664 | 95..700 | 652 | 31.4 | Plus |
| CG6966-PB | 664 | CG6966-PB | 34..664 | 95..700 | 652 | 31.4 | Plus |
| Fem-1-PB | 650 | CG9025-PB | 52..643 | 105..700 | 383 | 23.9 | Plus |
