Clone BO34310 Report

Search the DGRC for BO34310

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptTakl2-RB
Protein status:BO34310.pep: Imported from assembly
Sequenced Size:877

Clone Sequence Records

BO34310.complete Sequence

877 bp assembled on 2013-09-16

GenBank Submission: KX796988

> BO34310.complete
GAAGTTATCAGTCGACATGTCCGCTCCTGTAGAGGGTGTTCCCTATGAGG
AGATCCAGACAAAAGAGCTTATAGGCACCGGATTCTATGGCAGCGTATAC
AGGGCGGTCTGGAGAAATCGTGAGATCGCGCTGAAGAGAATTCGCGAGGG
ATGTGAGGATAAAAAGATTGAAAGAGAGATCTACCAGCTGACAAAGGCCA
GCCATGTCAACATAGTTGAGCTCTACGGCACATCGAGGCACGAGGGATGC
GCCCTGCTGTTGATGGAATTCGTAGACGGTGGATCTCTGTCCAGTTTTCT
GCACGCGAAAAGCAAGCCAAGTTATTCGCATGCCCACGCCTTCAACTGGG
CGCATCAGATCGCTCAGGGCATAGCCTATCTGCATGGCATGCAGCCGAAA
GCAGTAATTCATCGCGATATAAAGCCACTCAATACACTGCTATGCGAGAA
GGGACTCAAACTGAAGATTTGCGATTTCGGAACTGTTGTGGACCTATCCC
AATCGATATCGTGCAATGCGGGCACCTGCAGATACAAAGCGCCCGAGGTT
CTACAAGGAAATAAACCCGATGAAAAGTGCGATGTGTATAGTTGGGCTAT
TACCTTTTGGGAAATATTGTCGCGCAAGGAGCCATTTGAGCAATATAATA
CGCTTTTTGAACTGTACATGGCTATTAATGAAGGCGAGAGACCGGATTTA
AGTTGCATTATGTCTGGCTGCCCCGCGGATATAGTTGCTCTTTTGTACGC
TTCTTGGGATCCGGATATCAGCAAAAGATTTTCTATGGAACTGATTTCCC
AAAGCATGGGTAGAATCCTAAGTGAGGCGGGATCCATTCCACCACTGGAT
TTTTACTCAGCAAGCTTTCTAGACCAT

BO34310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Takl2-RB 846 CG4803-PB 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Takl2-RB 928 CG4803-RB 27..869 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22733407..22733709 368..66 1515 100 Minus
3R 32079331 3R 22732852..22733035 549..366 920 100 Minus
3R 32079331 3R 22732415..22732592 859..682 890 100 Minus
3R 32079331 3R 22732644..22732789 691..546 715 99.3 Minus
3R 32079331 3R 22733775..22733825 67..17 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:49:40 has no hits.

BO34310.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:04 Download gff for BO34310.complete
Subject Subject Range Query Range Percent Splice Strand
Takl2-RB 27..869 17..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:46 Download gff for BO34310.complete
Subject Subject Range Query Range Percent Splice Strand
Takl2-RB 27..869 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:46 Download gff for BO34310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22732413..22732590 684..861 98 <- Minus
3R 22732652..22732787 548..683 100 <- Minus
3R 22732854..22733033 368..547 100 <- Minus
3R 22733408..22733707 68..367 100 <- Minus
3R 22733775..22733825 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:04 Download gff for BO34310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18558135..18558312 684..861 98 <- Minus
arm_3R 18558374..18558509 548..683 100 <- Minus
arm_3R 18558576..18558755 368..547 100 <- Minus
arm_3R 18559130..18559429 68..367 100 <- Minus
arm_3R 18559497..18559547 17..67 100   Minus

BO34310.pep Sequence

Translation from 16 to 877

> BO34310.pep
MSAPVEGVPYEEIQTKELIGTGFYGSVYRAVWRNREIALKRIREGCEDKK
IEREIYQLTKASHVNIVELYGTSRHEGCALLLMEFVDGGSLSSFLHAKSK
PSYSHAHAFNWAHQIAQGIAYLHGMQPKAVIHRDIKPLNTLLCEKGLKLK
ICDFGTVVDLSQSISCNAGTCRYKAPEVLQGNKPDEKCDVYSWAITFWEI
LSRKEPFEQYNTLFELYMAINEGERPDLSCIMSGCPADIVALLYASWDPD
ISKRFSMELISQSMGRILSEAGSIPPLDFYSASFLDH

BO34310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Takl2-PB 281 CG4803-PB 1..281 1..281 1490 100 Plus
Tak1-PA 678 CG18492-PA 14..273 8..270 644 47.1 Plus
Takl1-PA 393 CG31421-PA 2..283 5..278 432 36.6 Plus
slpr-PD 1148 CG2272-PD 124..402 8..280 293 30.1 Plus
slpr-PC 1148 CG2272-PC 124..402 8..280 293 30.1 Plus