BO34313.complete Sequence
4330 bp assembled on 2013-11-09
GenBank Submission: KX796793
> BO34313.complete
GAAGTTATCAGTCGACATGCATTTACACTTTGAGCGAAACATCAACACAA
AATGCGACTGCACGATACTGTCATTATCATGGATGGGAAAGGTGCCAGAT
GATATACCCGAGGACGAGGGATGGAAGTTGAACCGCACCAACTACTACCA
GGAGGGATGGCTGGCCACGGGCAATGTGCGCGGCATTGTGGGCGTAACCT
TTACCACCTCACATTGCCGCAAGAACATGGACTATCCGTTGAGGACCAAC
TACAACCTGCGCGGGCATAGATCGGATGTTATCCTGGTCAAGTGGAATGA
GCCGTATCAAAAGCTAGCCTCCTGCGATAGTTCGGGCATCATCTTTGTGT
GGATCAAGTACGAGGGTCGCTGGTCCATCGAGCTGATCAACGATCGGAAC
ACACCGGTGACCCACTTCTCCTGGTCACACGATGGCCGCATGGCGCTGAT
CTGCTACCAGGATGGCTTCGTTCTGGTAGGATCCGTGGCTGGGCAGCGAT
ATTGGTCATCCATGCTCAATCTAGAGTCCACCATTACCTGCGGCATTTGG
ACGCCCGACGACCAGCAGGTGTACTTCGGCACAACCCAGGGTCAGGTTAT
TGTGATGGATGTTCACGGAGCGATGGTGTCGCAGGTTCAGCTGTCCAACG
ATGTGCCCATCACCTCGATGGCCTGGTCCTGCGAGAAGTTCAAGATGGAG
GAGGGCGAGGAGGCGGAGCCCGGTGTAACCAATGCGGCCAAGCGTTCCTT
TGTCCTGGCAGTAAGCTTCCAGAATGGATATATCTATTTGCTAAAGTCGT
TTGACGACGTCTCACCCGCACATATCAACACATGCCTTAATGGCGCCCTT
GGCATGGTCATGGAGTGGAGCAACTCTCGCGAGCTGCTCGCCGTCGCGGG
AACCCTGCGAACGGGAGTCGACGGAACGAAGACAGAAGACATGGGCACGC
CCAGTTGCTACACGAATCTGGTCAAGTTCTACACGGAAACGGGCACCTGT
CTGTATCAGGCTCACATTCCATGCAGCTCCGCCACCGTTTCGGCCATCAC
CTGGGGCCACAACGACAAGCGACTGTTCATCGCCACGGGGACACAGGTTC
ACATCGCCTGGGTCTCCAGACGGGTGGCCTCCCTGCAGCTGCTGTGCCGC
CTCGAGATCCAGGCGAGCGTCGGATCCGAGTCGCTGCTGCCCCTGCTGCC
GTTGCCTTCTAGGATTAAGTCTCTCATTGGCAATCTGTTTGCTCAAACGA
TAAGATGCTGTGTACCTGACCTCAAGTCGCTGCGGGATTTTGTTTCGCGA
CCACCGCTCTGCTCCACTCGGCTGCACTGCACCATGATCCGGCACGACGA
CGACTCCAATCTGAGCTCCGGCACATGCTATACGCTGTATCTGGAGTATC
TGGGCGGCTTGGTGCCGCTGCTCAAGGGCAAGCGCACCTCCAAGATTCGT
CCTGAGTTTGTAATCTTCGATCCCCAAGTTAATGATTCCCCCTTGTACTT
TCAATACTCCGCCGAGGCCAAGAGCTCCTCGGGCTCCAGCCAGTCCACCA
CCACGGGGAACAGTGGGCGCACCGACTCATCAGACAGTGACTTCGAGGAG
AGATCACGGTTTGGCTCCCCACGCACTCCTCGCAAGAAGCGAGTGCGTCC
AAAGAGACGCCATCAGGCGGGCGATCGGCTGAGCGCTTCTGGTGGCGGGG
TAAGCAACGATCCCGATAGCCTGGATGAACTGGCCTATGTGGACACACTG
CCGGAGGAAGTCAAGCTGGTCGAGGTGACCTCCAACATTTGGGGAACCAA
GTTCAAGATCCATGGACTTGCCAAAACCGTCCCAGCCAATTTAGGCCAAG
TAACTTATAAGACGTCCCTACTGCATTTGCAGCCGCGTCAAATGACGCTG
GTCATCACCGAGCTGCGCGACGATTTTCCACCTGGTCCCGATCCCAGCTT
TAATCCGAACATATTCTCTGAGGACGAGGATGAGCATCACCAGCACCAGG
GAATACATCACGATGCAGTGCCGCAGGTTAATGTGATCACCGCTCAGGAT
GGGGCTTCCTTAAAGCCGCCTATAATACCGCAACGTCGCCTCACCGATGG
AGCATCTGCACCATTGATAGCGCCCATGTCACCACGTCCAAATCGAATCC
TGGCGCGACACAAGAACTCATTGACTGTGAACGGAGAACGAGGATCTGGC
TCGTCGGCGGGCTTGAGTCCCCTAGCGCGAGCGGAGAGCTACGATGATGA
TTCATCCAATGAATCCCAGGAGGCAGGAGCTGCAGGCAGCCAGTCAACCA
CTGTGCTACTGCACCAGGCGCCCTCGAATGGCTCGGGTCCTGGACCCAGC
TGCAGTAAGAGCATAACGCGTCCCAAAACTATCAGCAGCTTCAAAAACAG
CTACAGCCGCTCCAGCTCCAATTCCAGCTGCCAGTCGCGTCACGCCATCT
CGCCACTGTACTGCGATGGAGCAGTGCCCACGCTGCAGAGTCCCAAGAAT
GCAGTGGCTCCTTCGGACATCATCTTCGAGCGTCCAGCAGTGCCCGCCGC
TGGCCAGACCACCCTGATGTCCTACTCGAGCAATGCGGACTATGCCAATA
ATGTGGTTCAGGTGAAGAATGCTCTGATGTCGGAGCCCGTGCGCTCGGCC
AACAGCCATGTGAATCCAGTGCCGCTGAACCTCAATCTAAATCTGGAGCG
AATGGATGCACGGGTTAAGTGCACGGCACCAACCACATCTTCGACGGCCA
AGCGACGGGAAATGTTGTATATCGATGAGGAGACGCAGTCGCCAACGCCT
ACGCCAAGTAGCAGCAGCATGAAACGAACGCCAACGGTGGTTTCAATAGC
TCCTGCTTTGCCCGATTCCATCACACGCAGCTGCAGCGTCGGCTATCTGG
ATTCGGTTGCCATCACGCCATCCGACGAAGCGCTGTCCGCTCTGCGTAAG
GATGCGCCAAACAAGCGGCTGATATTGGTGGACAAGAAGAGGAATCGCCG
GAAAAGGCAACAGCAGGAGGATGCCCGGCGCCACAAGCTGCAGCAAACTG
GGAAGTCCAAGAGCCTAGACTCCTGCGACCTGTTGTCCCTACAGACTAAG
CTGTCCAGCAAGGAGCACGAGCAGGTGGTGCGCAAGCTGCAGGAGATATC
CGATAGCAGCGCCTGCAGCAGTGCGGCCAACACATTGTGCTTCAAGTGCC
GCAACAACATGAGCCCCAGCAGTGCCTGCAAACGGTGTCAGCCCTCGGCG
AGCTCCGTCCTGGATGAGATTACAGCAGTCGTGCCCGCGGTGGAGCCGGC
CAAGGAGTCTCCTGCGGTGCAGGCCAAGCCAGCGCCCAAGAAACGCTTCG
ATGTTATCACTAGCTTCACAGACTCGCCACTTTTTACGAGGAAACATCGA
TTTGGAATCGGCCGCAGTAAGGAAACGGCTGGCACTGAAAACTCCACTCC
ACTGCTGGGCAGAAAGCAGGACAATGGCTTCAGCTTTGTGAAGCAGCTGT
CCGAGGTGCGTTGGAGGCGCAAGGAACAGCCAGCACAGGCGCAAGTTAAT
GGTTCTAGTAATGCCAGTACTTTAGAGCGTCAGCCACAGCCGGAGATCAC
AGGTGCCGCTTGTGGCACAGTGGAAGCTACACCAGTGGAGGCGAAGGCTT
CGGTTTCTCTGCATACTCAGGCTCTCACCACTTTAGAGAACATAATAAGC
CGCCTTCGAGATCTAGACGAGGGTCGTTTGACGCCTCCTTCAACCCCACA
ACGACTGCCTCGAAGTTCTCCTGCATCTCCGGCAGCCAGCAAAAAGAACA
AAAGGCAGCAGAGCAACTCTCCCATTCGCCACATATTGAATTCACCGCTT
TTGAATCGGCGTCAGCGCAAAAAACAGAGCATTATCGAGAGCTCCGATGA
TGAGGGTAACCAGACCAATGGATCCGGTGAGGAGAGCAACAATGCGGGCA
ATGGCAAGCAGTATCGCGACCTGGAGACCTTCCAAAAAGCTCAACTGCGT
CAGAAGCTAAAGCGCGGCAAGATTGAACCCAATGGCAGTGCTAGTTGTGC
CAATCCGGCGCCAGTGCGTCGTGAATTTGTGATGCACAACAAGGCGCCCA
TGTGGAATGAGATGAGTCAGGTGTACCAGCTGGACTTTGGCGGACGCGTT
ACCCAGGAGTCAGCCAAGAACTTCCAAATCGAGTTTCGTGGCAAGCAGGT
CATGCAATTCGGTCGCATTGATGGAAATGCCTATACCCTGGATTTCCAGT
ATCCTTTCTCCGCCCTCCAGGCCTTCGCCGTGGCTCTGGCCAATGTGACA
CAGCGACTTAAGGCAAGCTTTCTAGACCAT
BO34313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tusp-RE | 4299 | CG5586-PE | 1..4296 | 17..4312 | 21480 | 100 | Plus |
| Tusp-RD | 4299 | CG5586-PD | 1..4296 | 17..4312 | 21480 | 100 | Plus |
| Tusp-RF | 4302 | CG5586-PF | 1..4299 | 17..4312 | 21415 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tusp-RE | 5998 | CG5586-RE | 794..5089 | 17..4312 | 21480 | 100 | Plus |
| Tusp-RD | 5398 | CG5586-RD | 194..4489 | 17..4312 | 21480 | 100 | Plus |
| Tusp-RF | 5635 | CG5586-RF | 428..4726 | 17..4312 | 21415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27631290..27633206 | 1755..3671 | 9585 | 100 | Plus |
| 3R | 32079331 | 3R | 27630091..27630609 | 737..1255 | 2595 | 100 | Plus |
| 3R | 32079331 | 3R | 27629570..27630029 | 278..737 | 2300 | 100 | Plus |
| 3R | 32079331 | 3R | 27633260..27633601 | 3669..4010 | 1695 | 99.7 | Plus |
| 3R | 32079331 | 3R | 27630954..27631227 | 1484..1757 | 1370 | 100 | Plus |
| 3R | 32079331 | 3R | 27630668..27630896 | 1256..1484 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 27633653..27633848 | 4005..4200 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 27629346..27629514 | 111..279 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 27633907..27634023 | 4196..4312 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 27615395..27615491 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:33:04 has no hits.
BO34313.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:12 Download gff for
BO34313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tusp-RD | 194..4489 | 17..4314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:49 Download gff for
BO34313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tusp-RD | 194..4489 | 17..4314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:49 Download gff for
BO34313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27629348..27629512 | 113..277 | 100 | -> | Plus |
| 3R | 27615395..27615490 | 17..112 | 100 | -> | Plus |
| 3R | 27629570..27630029 | 278..737 | 100 | -> | Plus |
| 3R | 27630092..27630609 | 738..1255 | 100 | -> | Plus |
| 3R | 27630668..27630896 | 1256..1484 | 100 | -> | Plus |
| 3R | 27630955..27631226 | 1485..1756 | 100 | -> | Plus |
| 3R | 27631292..27633205 | 1757..3670 | 100 | -> | Plus |
| 3R | 27633262..27633597 | 3671..4006 | 100 | -> | Plus |
| 3R | 27633655..27633846 | 4007..4198 | 100 | -> | Plus |
| 3R | 27633910..27634023 | 4199..4314 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:12 Download gff for
BO34313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23456677..23456948 | 1485..1756 | 100 | -> | Plus |
| arm_3R | 23455814..23456331 | 738..1255 | 100 | -> | Plus |
| arm_3R | 23441117..23441212 | 17..112 | 100 | -> | Plus |
| arm_3R | 23455070..23455234 | 113..277 | 100 | -> | Plus |
| arm_3R | 23455292..23455751 | 278..737 | 100 | -> | Plus |
| arm_3R | 23456390..23456618 | 1256..1484 | 100 | -> | Plus |
| arm_3R | 23457014..23458927 | 1757..3670 | 100 | -> | Plus |
| arm_3R | 23458984..23459319 | 3671..4006 | 100 | -> | Plus |
| arm_3R | 23459377..23459568 | 4007..4198 | 100 | -> | Plus |
| arm_3R | 23459632..23459745 | 4199..4314 | 98 | | Plus |
BO34313.pep Sequence
Translation from 16 to 4330
> BO34313.pep
MHLHFERNINTKCDCTILSLSWMGKVPDDIPEDEGWKLNRTNYYQEGWLA
TGNVRGIVGVTFTTSHCRKNMDYPLRTNYNLRGHRSDVILVKWNEPYQKL
ASCDSSGIIFVWIKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDG
FVLVGSVAGQRYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVH
GAMVSQVQLSNDVPITSMAWSCEKFKMEEGEEAEPGVTNAAKRSFVLAVS
FQNGYIYLLKSFDDVSPAHINTCLNGALGMVMEWSNSRELLAVAGTLRTG
VDGTKTEDMGTPSCYTNLVKFYTETGTCLYQAHIPCSSATVSAITWGHND
KRLFIATGTQVHIAWVSRRVASLQLLCRLEIQASVGSESLLPLLPLPSRI
KSLIGNLFAQTIRCCVPDLKSLRDFVSRPPLCSTRLHCTMIRHDDDSNLS
SGTCYTLYLEYLGGLVPLLKGKRTSKIRPEFVIFDPQVNDSPLYFQYSAE
AKSSSGSSQSTTTGNSGRTDSSDSDFEERSRFGSPRTPRKKRVRPKRRHQ
AGDRLSASGGGVSNDPDSLDELAYVDTLPEEVKLVEVTSNIWGTKFKIHG
LAKTVPANLGQVTYKTSLLHLQPRQMTLVITELRDDFPPGPDPSFNPNIF
SEDEDEHHQHQGIHHDAVPQVNVITAQDGASLKPPIIPQRRLTDGASAPL
IAPMSPRPNRILARHKNSLTVNGERGSGSSAGLSPLARAESYDDDSSNES
QEAGAAGSQSTTVLLHQAPSNGSGPGPSCSKSITRPKTISSFKNSYSRSS
SNSSCQSRHAISPLYCDGAVPTLQSPKNAVAPSDIIFERPAVPAAGQTTL
MSYSSNADYANNVVQVKNALMSEPVRSANSHVNPVPLNLNLNLERMDARV
KCTAPTTSSTAKRREMLYIDEETQSPTPTPSSSSMKRTPTVVSIAPALPD
SITRSCSVGYLDSVAITPSDEALSALRKDAPNKRLILVDKKRNRRKRQQQ
EDARRHKLQQTGKSKSLDSCDLLSLQTKLSSKEHEQVVRKLQEISDSSAC
SSAANTLCFKCRNNMSPSSACKRCQPSASSVLDEITAVVPAVEPAKESPA
VQAKPAPKKRFDVITSFTDSPLFTRKHRFGIGRSKETAGTENSTPLLGRK
QDNGFSFVKQLSEVRWRRKEQPAQAQVNGSSNASTLERQPQPEITGAACG
TVEATPVEAKASVSLHTQALTTLENIISRLRDLDEGRLTPPSTPQRLPRS
SPASPAASKKNKRQQSNSPIRHILNSPLLNRRQRKKQSIIESSDDEGNQT
NGSGEESNNAGNGKQYRDLETFQKAQLRQKLKRGKIEPNGSASCANPAPV
RREFVMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGR
IDGNAYTLDFQYPFSALQAFAVALANVTQRLKASFLDH
BO34313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tusp-PE | 1432 | CG5586-PE | 1..1432 | 1..1432 | 7452 | 100 | Plus |
| Tusp-PD | 1432 | CG5586-PD | 1..1432 | 1..1432 | 7452 | 100 | Plus |
| Tusp-PF | 1433 | CG5586-PF | 1..1433 | 1..1432 | 7440 | 99.9 | Plus |
| Tusp-PG | 1430 | CG5586-PG | 1..1430 | 1..1432 | 7430 | 99.9 | Plus |
| Oseg4-PB | 1205 | CG2069-PB | 62..336 | 75..364 | 324 | 28.5 | Plus |
