Clone BO34320 Report

Search the DGRC for BO34320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG8138-RA
Protein status:BO34320.pep: Imported from assembly
Sequenced Size:733

Clone Sequence Records

BO34320.complete Sequence

733 bp assembled on 2013-09-16

GenBank Submission: KX796897

> BO34320.complete
GAAGTTATCAGTCGACATGACAGACTTCAGCATTGCCAAGTTTAACAACT
ATCAGGAGTATCTGCACTCCTTTACGACCGTCGAGGACTTTCGGTACTTA
CCTTTCCACAAAACGGTCATTACTCTCACAAAACTCGGCTATCGGGAACA
CCGCACTTTCTACGAGGAGGATGAGTTCTTAAACGTGAAAAAGCAGGTGG
AACAGCTCCTGAATCCAACGGTTTCTGCCCAGATATACTACAGTCAGTAC
TTCAAGGGAACCGATCCAGCACTTTGGGCATTGGCCGAACGCGAGCACGG
GAATGTCCAGCAGGAGATATCGACCATTATCTTTCTGGAAATAAGCGGAC
GAAGTGGGTTCTCCAAGTCAGGCTACATTGACTTTGAGGCCAGTCTGCGA
AACTACCGGTTCAAGGGACCAAATGCAGTCGATTGGAAGGCGGTTTTCGA
GGAGCGGAAGTTGCTGAAGCCCCAGCCGAGTGATATAGTCTTCTACGACT
GGAAGACCAGGAAGATTTTTGCGAATGACAACGACAATTATACGGTGGTA
GCTCATCCGGAACATGGTCTTATGTTTGCTCACAAGGGAGATCACAAGAA
CATACCCGTTACCACCAAGAAGAACCCCTTTTCCAGCAACGTTAGACGCT
CTATGATCAGGTCAAATCTATATGGTTTCATTATACTGTACGACCACCAC
GTTCGTAAGAAGACTGCAAGCTTTCTAGACCAT

BO34320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8138-RA 702 CG8138-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8138-RA 795 CG8138-RA 42..741 16..715 3500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13181707..13182100 322..715 1970 100 Plus
3R 32079331 3R 13181345..13181651 16..322 1535 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:48:41 has no hits.

BO34320.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:42 Download gff for BO34320.complete
Subject Subject Range Query Range Percent Splice Strand
CG8138-RA 43..741 17..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:31 Download gff for BO34320.complete
Subject Subject Range Query Range Percent Splice Strand
CG8138-RA 43..741 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:31 Download gff for BO34320.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13181346..13181651 17..322 100 -> Plus
3R 13181708..13182100 323..717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:42 Download gff for BO34320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9007068..9007373 17..322 100 -> Plus
arm_3R 9007430..9007822 323..717 99   Plus

BO34320.pep Sequence

Translation from 16 to 733

> BO34320.pep
MTDFSIAKFNNYQEYLHSFTTVEDFRYLPFHKTVITLTKLGYREHRTFYE
EDEFLNVKKQVEQLLNPTVSAQIYYSQYFKGTDPALWALAEREHGNVQQE
ISTIIFLEISGRSGFSKSGYIDFEASLRNYRFKGPNAVDWKAVFEERKLL
KPQPSDIVFYDWKTRKIFANDNDNYTVVAHPEHGLMFAHKGDHKNIPVTT
KKNPFSSNVRRSMIRSNLYGFIILYDHHVRKKTASFLDH

BO34320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8138-PA 233 CG8138-PA 1..233 1..233 1243 100 Plus
CG14013-PA 241 CG14013-PA 9..240 3..232 392 36.6 Plus
CG14017-PA 238 CG14017-PA 26..237 12..232 324 33.9 Plus
CG3528-PA 235 CG3528-PA 2..233 5..231 319 31 Plus