BO34321.complete Sequence
436 bp assembled on 2013-09-16
GenBank Submission: KX799721
> BO34321.complete
GAAGTTATCAGTCGACATGCCGCCCTGGCGTGGTGAACTTCCAATGGCCG
CGTTCCTCGCCAACTCCAAGCAGTACTTGCGACCATTGAGCAGCGCCATC
ATCAGCCAGAGCCAGACTTTGGCCGCTCAGAACACAACCCCCGTTGCATT
GCTGCCACAGATCAGGTCATTCCAGACCTCGCCAGTCACGCGTGACATTG
ACTCGGCCGCCAAATTCATTGGTGCTGGTGCCGCAACAGTCGGTGTCGCT
GGATCCGGTGCTGGTATCGGAACAGTATTCGGTTCCCTCATCATCGGCTA
CGCCAGGAACCCATCGCTGAAACAGCAGCTGTTCTCCTACGCCATTCTGG
GCTTCGCCCTGTCCGAGGCCATGGGTCTGTTCTGTTTGATGATGGCCTTC
CTGCTGCTGTTCGCCTTCGCAAGCTTTCTAGACCAT
BO34321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1746-RF | 405 | CG1746-PF | 1..402 | 17..418 | 2010 | 100 | Plus |
| CG1746-RG | 417 | CG1746-PG | 45..414 | 49..418 | 1835 | 99.7 | Plus |
| CG1746-RE | 417 | CG1746-PE | 45..414 | 49..418 | 1835 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1746-RF | 1350 | CG1746-RF | 77..478 | 17..418 | 2010 | 100 | Plus |
| CG1746-RG | 722 | CG1746-RG | 106..475 | 49..418 | 1835 | 99.7 | Plus |
| CG1746-RE | 1730 | CG1746-RE | 489..858 | 49..418 | 1835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31217738..31217945 | 259..52 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 31217017..31217178 | 418..257 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 31218793..31218828 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:48:46 has no hits.
BO34321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:44 Download gff for
BO34321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1746-RF | 77..478 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:33 Download gff for
BO34321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1746-RF | 77..478 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:33 Download gff for
BO34321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31217015..31217177 | 258..420 | 98 | <- | Minus |
| 3R | 31217740..31217944 | 53..257 | 100 | <- | Minus |
| 3R | 31218793..31218828 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:44 Download gff for
BO34321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27042737..27042899 | 258..420 | 98 | <- | Minus |
| arm_3R | 27043462..27043666 | 53..257 | 100 | <- | Minus |
| arm_3R | 27044515..27044550 | 17..52 | 100 | | Minus |
BO34321.pep Sequence
Translation from 16 to 436
> BO34321.pep
MPPWRGELPMAAFLANSKQYLRPLSSAIISQSQTLAAQNTTPVALLPQIR
SFQTSPVTRDIDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPS
LKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAFASFLDH
BO34321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1746-PF | 134 | CG1746-PF | 1..134 | 1..134 | 665 | 100 | Plus |
| CG1746-PG | 138 | CG1746-PG | 15..138 | 11..134 | 600 | 99.2 | Plus |
| CG1746-PE | 138 | CG1746-PE | 15..138 | 11..134 | 600 | 99.2 | Plus |
| CG1746-PB | 138 | CG1746-PB | 15..138 | 11..134 | 600 | 99.2 | Plus |
| CG1746-PC | 138 | CG1746-PC | 15..138 | 11..134 | 600 | 99.2 | Plus |
