BO34326.complete Sequence
3997 bp assembled on 2013-11-20
> BO34326.complete
GAAGTTATCAGTCGACATGTTTCCCAGACCACCCACTTGTGTTTATGATA
GTTTATGCCCAGAAAGACTGTCGTGCAGAATGGTCGTCGGCTCTAACCAC
ACGCGGCGCGGTGAAACTGGCAGCAGATTTACAAACAGCAGCAGCTCCAG
CAGCACAAGCGGTGGCCCCACCGCTTCGGCCAGTAGCACCACCAGCGTAA
CGTCTTCACTAGCCACCAATTCCACGTCGACATCGACGGCTGCGGCTCTG
TTGTCGTCCATGTCCCACAAGAGCCATGGCCCTCCGCCATCCGCACCTCC
ATCTGCACACCACCAGACGAACCAGCAGCACCACCAGGTGGCCCACAGCC
AGCCACATGCCACCCATTACCAACAGACAAACCAGCACCCTAGCCACCAT
CACCAGTCCCATCAGTCTTCGAACGGCAGTGGCGGAGGATCTGCTGGATC
GGGATCTGGATCTGGATCGGTGGTTAGTGGACTCAATGGTTGCAACGGCA
GCGCCGTCAGCCGCCTATCGCAATCCACTGGGATGTCGCCGCGGGAACTG
TCCGAGAACGATGACCTGGCCACATCGCTGATCCTCGATCCGCATCTTGG
ATTTCAGACCCACAAGATGAACATACGCTTTCGGCCTCTTAAGGTGGACA
CGCAACAACTGAAAGCGATCGTGGACGACTTTATCCACACGCAGAACTAC
GATATAGCCATCCAGCGCATATACGAGGGGCCGTGGATACCGCGTCATCT
CAAGAACAAGAACAAGATTGCCACCAAGCGGCTCCACGATCATATCGTCC
GATACCTGCGCGTCTTTGACAAGGATAGCGGCTTTGCAATCGAGGCCTGC
TACAGATACACACTGGAAGAGCAACGGGGCGCCAAGATTAGCTCGACGAA
GCGCTGGTCGAAGAACGACAAGATCGAATGCCTGGTTGGCTGCATCGCCG
AGCTGACAGAGGCGGAGGAGGCCGCTCTGCTGCACTCTGGCAAAAATGAC
TTCTCAGTAATGTACAGTTGTCGCAAGAACTGCGCCCAATTGTGGCTGGG
ACCGGCTGCCTATATCAACCACGATTGTCGCGCCAACTGCAAGTTTTTGG
CCACCGGCAGGGACACAGCGTGTGTAAAGGTCCTGCGCGACATTGAGGTA
GGGGAGGAGATAACCTGCTTCTACGGCGAGGACTTCTTTGGGGATTCCAA
TCGCTATTGTGAGTGCGAAACGTGCGAACGCCGTGGGACTGGAGCCTTCG
CCGGGAAAGATGATGGCCTGATGCTGGGGCTCAGTATGGGACTCGGCTTG
GCCAGCAGTGGACCTGGTAATAATGGCGGCTATCGTCTGAGGGAGACAGA
CAATCGGATTAACCGCATCAAGAGCCGAGCCAACTCCACAAACAGCACCT
CAAACAGCAACAGTAATACAAATGATTCCACTGGCCCTAGCGAGACTAGT
AGCACAAATGGATTGGTGGCTTCTGGCGGAGCAGGAGGAGCCACTGGTGC
CGCGATGCTGCCCACACCCTCGCAACAATCAACTGGCGGCAAGGAGGCCA
CAGCCGCCGTCTCTTTGCTCGAAAAGAAACTTCCGAATGTTGTTGTTTCA
CCGCTGACCATGAAGGAGCTGCGCCAAAAGGGAATGACTAAGTACGATGC
CGAGATGATCATGGCCAACGCAGCTTACCAGCAGCAGCACCATCATCAGC
ATCATTTCCATCACCACCATCATCATCATCACCATCACCACAATCATGGC
CAGCATGCAAGTACTGGAGCCGAGGCTACAGCGGCTGTACAGCAAATGGC
GGCCATGCAGAAGCCAGGAGTTGGCGGAACAGGAGCTGCAGGAAATGCTG
GAGCAACGACAGTGAGCAGCGTGGCAGCCGGAGCGGGCTCCGAGGTTAAT
GGTGGTCGTTCCACCAGTCTACGCAAGTCTATGCGCGTTAACAGCACCAG
CAGCAGCATTTCCACCGCCTCCGCGGACGAGGTGATCGCACCCGTGGTCG
CGGCGAGCATTTCGCTGCCCAGCAAGGCACCGGTGGTTCTTATGCCGCGT
TGCAAGCCAGCTCAGATGGCCATTGCTGCGCTGCACCAGAGCCAGCAGCG
CCAGCTTAGACGTAGCGAACGCCAGAAGGAAAAGCTGACGGACGGCGAGA
GCAGCGACACCAGCAGCGAGCAGCAAAAGAAAGAGCAGAAGCAGCAGGAT
CACCAACTGCCGCAAAAAATGTTCAGCCTGGCGGAGGAACCACAACCAGA
GAAGTCGGAGGAGAAGCAACAGGAGCAGCAGAAGCGTGTGACGCGAAATA
GTGCGGGAAGAGTAGGATTGGTAGCCAGATTAGCCACTGCCCATAACAAT
AACATTGCAACCACAACAAATAGCAGCAGCAGCAGCAACAAAGCAACAAC
GATTACAAATTGTAATAATCATAATAGTAATAATAGCAGTAGAATTAATC
ATAATTCAAATCTTAGCAGTAGACTTAGTGTTAAATCGAGGAAGCCAGCA
CCAAGTGAGGCCTCGTCCATACCCTCATCCACATCATCAGAAAATCAGCA
GCAGCAGGCAACGCGTCGCAGCTGCAGCCCGACTCCCGCGTACAAGAAGA
ACCTTTTGGCCAGCTTTGATCCCGATCCTCCCTCCACCCAAGGAATCAAG
GAGCAGCTAAAGGACGAATCAGTTACTTATTCGCCGGTCAAGCAGAAACG
TAGCAGAAGGGCCGCTGCTCTGGCGGCAGCGCAAAGTATCCACTGCGAAG
CGTTGGGCGGATTCCCTACCGGTTCAACTGGTAGCCAGCGAAAGAGGGCC
CAGGCCGGAGAACCTACCACCTCATGCTCCTCTACAACCATCAGCAATGT
TGAGCCCCTACTGAAGACTCCTGAGCGCAGGCTGAAGCTAACGTTGCGCA
TGAAACGCTCACCAATCCTAGACGAAGTAATTGAGCTCGGAACGAGTCTG
AGCAACGGAGGAGCTGGTCGAGGTGCACCAGGCTCCCATCGGGAAGGGAC
AGCAGGAGAGGGGTCAGTTAGAAGTGCGCTAAACCTAACCGGCAGCAGCT
CAAATGGTATTGAATACGAGATACTGCGCATGGAGGGTATTTCAGAGCAC
GGCAACGATGACGATGAGGACGAGGAAGAAGATGATGAAGAGCCAGCTGC
CGAGGAAGAGGAGGAGCCGCCGCCGAAGGAGGAGCTGCAGCTGGTGAACA
AGAAGCAGAGAAAGAAGCAGCGCAGCCGGAGCAGGAGCAGCCAACGCAGA
TCGCCGGCCCCAAGCAGTGTATATGGAACACCGCAGAAGAAGCGACTCCG
CTTGATCTTTGGCAACGAATCCCACACCATAGACATTCCACCAGCAGCAG
CAGAGGGATCGGGCAGCGGCTTGGATGACCTAAACAGCAGTGGAGGCGGT
GGCGACGAGTCCTTCAATGCCTCCTACGCCAGCAGCACCAGTCTGACAGT
TAATACATCCTCAAGCAGTACCAGCTCATCCAGTGGAGTGGGAGGAGCTA
CGTCCACCTCTGCAGAGCCAGTGGATTCGTCCACGGTTGGACCGCCCATT
GCTGCCCAATCACCTTCATCGACGACCAGCAGCTCCTTTCAATCGGCCTG
CACATCGACCACCAACAGCAACAGCTACTTTCCCAATGGCAAGCAACGAG
CTGCTGGCGAGGACTCCTATGCGATGCACTACTACCAGCTGGGCAAATTT
GCTGGAACACCAAGTCCGGGACAGGGTCAGGCCATCGTGAGCAGCAGCAG
TGGTTCGTCAGGAGGAGGAGGATCTGGAGCTGGCTTTCTGAGCATGCCCA
AGCACACATTCGGCACCTGTGCTCTCCTGGCCCCCACCAGTTTCGCCTGC
CTACAGAATCAGCCGCAGATTAGCCAGCAGAAGACCAGCAGCGGCGGAGG
AGCAGGAGTGGTGCCCACCTCCACTTCAACGGGCGCAGTTACATCTCACC
ATCATACAAACAACCATCACGGCCAGAAAGCAAGCTTTCTAGACCAT
BO34326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt4-20-RB | 3903 | CG13363-PB | 1..3900 | 80..3979 | 19500 | 100 | Plus |
| Hmt4-20-RA | 3903 | CG13363-PA | 1..3900 | 80..3979 | 19500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt4-20-RB | 5149 | CG13363-RB | 24..3987 | 17..3979 | 19770 | 100 | Plus |
| Hmt4-20-RA | 6137 | CG13363-RA | 652..4567 | 64..3979 | 19580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 650053..653238 | 3979..794 | 15930 | 100 | Minus |
| X | 23542271 | X | 653370..654098 | 793..65 | 3645 | 100 | Minus |
| X | 23542271 | X | 654865..654915 | 66..17 | 205 | 98 | Minus |
Blast to na_te.dros performed 2014-11-28 14:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1066..1142 | 120..196 | 133 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1582 | 1361..1415 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2460 | 120..246 | 131 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6833 | 120..213 | 130 | 61.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1097 | 2235..2285 | 124 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6864 | 120..224 | 119 | 62 | Plus |
BO34326.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-20 11:31:26 Download gff for
BO34326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt4-20-RB | 30..3987 | 23..3981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:40 Download gff for
BO34326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt4-20-RB | 30..3987 | 23..3981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:40 Download gff for
BO34326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 650051..653238 | 794..3981 | 99 | <- | Minus |
| X | 653370..654096 | 67..793 | 100 | <- | Minus |
| X | 654865..654909 | 23..66 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-20 11:31:26 Download gff for
BO34326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 544084..547271 | 794..3981 | 99 | <- | Minus |
| arm_X | 547403..548129 | 67..793 | 100 | <- | Minus |
| arm_X | 548898..548942 | 23..66 | 97 | | Minus |
BO34326.pep Sequence
Translation from 16 to 3997
> BO34326.pep
MFPRPPTCVYDSLCPERLSCRMVVGSNHTRRGETGSRFTNSSSSSSTSGG
PTASASSTTSVTSSLATNSTSTSTAAALLSSMSHKSHGPPPSAPPSAHHQ
TNQQHHQVAHSQPHATHYQQTNQHPSHHHQSHQSSNGSGGGSAGSGSGSG
SVVSGLNGCNGSAVSRLSQSTGMSPRELSENDDLATSLILDPHLGFQTHK
MNIRFRPLKVDTQQLKAIVDDFIHTQNYDIAIQRIYEGPWIPRHLKNKNK
IATKRLHDHIVRYLRVFDKDSGFAIEACYRYTLEEQRGAKISSTKRWSKN
DKIECLVGCIAELTEAEEAALLHSGKNDFSVMYSCRKNCAQLWLGPAAYI
NHDCRANCKFLATGRDTACVKVLRDIEVGEEITCFYGEDFFGDSNRYCEC
ETCERRGTGAFAGKDDGLMLGLSMGLGLASSGPGNNGGYRLRETDNRINR
IKSRANSTNSTSNSNSNTNDSTGPSETSSTNGLVASGGAGGATGAAMLPT
PSQQSTGGKEATAAVSLLEKKLPNVVVSPLTMKELRQKGMTKYDAEMIMA
NAAYQQQHHHQHHFHHHHHHHHHHHNHGQHASTGAEATAAVQQMAAMQKP
GVGGTGAAGNAGATTVSSVAAGAGSEVNGGRSTSLRKSMRVNSTSSSIST
ASADEVIAPVVAASISLPSKAPVVLMPRCKPAQMAIAALHQSQQRQLRRS
ERQKEKLTDGESSDTSSEQQKKEQKQQDHQLPQKMFSLAEEPQPEKSEEK
QQEQQKRVTRNSAGRVGLVARLATAHNNNIATTTNSSSSSNKATTITNCN
NHNSNNSSRINHNSNLSSRLSVKSRKPAPSEASSIPSSTSSENQQQQATR
RSCSPTPAYKKNLLASFDPDPPSTQGIKEQLKDESVTYSPVKQKRSRRAA
ALAAAQSIHCEALGGFPTGSTGSQRKRAQAGEPTTSCSSTTISNVEPLLK
TPERRLKLTLRMKRSPILDEVIELGTSLSNGGAGRGAPGSHREGTAGEGS
VRSALNLTGSSSNGIEYEILRMEGISEHGNDDDEDEEEDDEEPAAEEEEE
PPPKEELQLVNKKQRKKQRSRSRSSQRRSPAPSSVYGTPQKKRLRLIFGN
ESHTIDIPPAAAEGSGSGLDDLNSSGGGGDESFNASYASSTSLTVNTSSS
STSSSSGVGGATSTSAEPVDSSTVGPPIAAQSPSSTTSSSFQSACTSTTN
SNSYFPNGKQRAAGEDSYAMHYYQLGKFAGTPSPGQGQAIVSSSSGSSGG
GGSGAGFLSMPKHTFGTCALLAPTSFACLQNQPQISQQKTSSGGGAGVVP
TSTSTGAVTSHHHTNNHHGQKASFLDH
BO34326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt4-20-PB | 1300 | CG13363-PB | 1..1300 | 22..1321 | 6715 | 100 | Plus |
| Hmt4-20-PA | 1300 | CG13363-PA | 1..1300 | 22..1321 | 6715 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 451..1307 | 453..1311 | 235 | 19.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 387..1239 | 455..1323 | 218 | 20 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 352..1084 | 456..1208 | 212 | 19.1 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 322..1007 | 613..1323 | 200 | 19.9 | Plus |
| bun-PF | 1097 | CG42281-PM | 73..265 | 430..634 | 173 | 27.2 | Plus |
| bun-PP | 1137 | CG42281-PP | 73..265 | 430..634 | 173 | 27.2 | Plus |
