Clone BO34327 Report

Search the DGRC for BO34327

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptStim-RD
Protein status:BO34327.pep: Imported from assembly
Sequenced Size:1717

Clone Sequence Records

BO34327.complete Sequence

1717 bp assembled on 2013-11-09

GenBank Submission: KX794751

> BO34327.complete
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACTACAT
ATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCCTATC
AGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGATATG
GAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGGAACT
AGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTAGATT
TGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTCGGAT
TTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACGAATT
GTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCGCCAC
AACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAATCAT
CAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAGAGGC
TTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTCGTTT
CCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGAGGCA
CGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGCATCG
CTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAACAATG
GTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTTACAA
AGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTACCAA
CAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTTTTGGAATTCCAG
CAAGCTTTCTAGACCAT

BO34327.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RD 1686 CG9126-PD 1..1683 17..1699 8415 100 Plus
Stim-RA 1713 CG9126-PA 1..1671 17..1687 8355 100 Plus
Stim-RF 354 CG9126-PF 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RD 2141 CG9126-RD 193..1875 17..1699 8415 100 Plus
Stim-RA 2255 CG9126-RA 193..1863 17..1687 8355 100 Plus
Stim-RF 2319 CG9126-RF 600..1927 360..1687 6640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 1637..1044 2970 100 Minus
X 23542271 X 15938756..15939100 361..17 1725 100 Minus
X 23542271 X 15936792..15937031 763..524 1170 99.2 Minus
X 23542271 X 15936075..15936250 1046..871 880 100 Minus
X 23542271 X 15937591..15937754 523..360 820 100 Minus
X 23542271 X 15936319..15936436 872..755 590 100 Minus
X 23542271 X 15935293..15935344 1687..1636 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:33:14 has no hits.

BO34327.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:15 Download gff for BO34327.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 193..1875 17..1701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:52 Download gff for BO34327.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 193..1875 17..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:52 Download gff for BO34327.complete
Subject Subject Range Query Range Percent Splice Strand
X 15935295..15935342 1638..1685 100 <- Minus
X 15935417..15936008 1046..1637 100 <- Minus
X 15936076..15936248 873..1045 100 <- Minus
X 15936319..15936434 757..872 100 <- Minus
X 15936799..15937031 524..756 100 <- Minus
X 15937591..15937754 360..523 100 <- Minus
X 15938758..15939100 17..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:15 Download gff for BO34327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15829328..15829375 1638..1685 100 <- Minus
arm_X 15829450..15830041 1046..1637 100 <- Minus
arm_X 15830109..15830281 873..1045 100 <- Minus
arm_X 15830352..15830467 757..872 100 <- Minus
arm_X 15830832..15831064 524..756 100 <- Minus
arm_X 15831624..15831787 360..523 100 <- Minus
arm_X 15832791..15833133 17..359 100   Minus

BO34327.pep Sequence

Translation from 16 to 1717

> BO34327.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGFGIPASFLDH

BO34327.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PD 561 CG9126-PD 1..561 1..561 2930 100 Plus
Stim-PA 570 CG9126-PA 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus