BO34330.complete Sequence
2260 bp assembled on 2013-11-09
GenBank Submission: KX794519
> BO34330.complete
GAAGTTATCAGTCGACATGCCTAGTGATAAAGAAAGTCCAGAAACCAAGC
CACTGAACAATAACAATACAAATGGAAACGGTGGCAGTGTACCAAGCAAG
CCAAAGATCCAGCCAAAATATAGCATTCACCGAGATGTGCTGACCCATGA
GGTGGTGATAAAGCAAACAGGATATGCGGCCAGGGACAAGAGCATACCCT
CCTCGCTGCGAAACTGCTGGCGGAGCTGGAACTTCTTTGCACTCTTCACC
GGCGTGATTCCCATTCTGCAATGGCTACCCCAGTATTCACCCAGGAGAGA
TCTTCCTGGCGATATAATCGCCGGCTTCACCGTCGCCATCATGAACATAC
CTCATGGCATGGCTTATGGCATTCTAGCAGGAGTTTCGGCTGGAAATGGT
CTCTATATGGCCGTGTTTCCGGTGCTGGCCTACATGTTCCTGGGGACCTC
CAAGCACATCTCCATCGGCACTTTTGCGGTGGCCAGCATGATGACGGCAA
AGGTGGTGGATACGTATGCCAACGTAGATGACCACCATCAGATATTGCCT
ATTAACGCCTTCGGTTTGCAATCGAATGGAACAGCGACTGCGTCCCCACT
CCTGCTAATAAATTCCTCAGCGCTTGCGGATTCTGTCTCCTCAACCACTA
TATCACCTTTTCAGCTTTTAAATTCTACTCTAAATGCGGATCCCATTACT
AAAATAGAGGTGGCGACCTCTTTGGCACTTACCGTGGGAATTGTAAACCT
CCTAATGGCCTTTCTAAGACTGGGAACCCTGTCATCCCTTTTGAGTGAAC
CTCTGGTGAATGGATTCACCACTGCTGCAGCGTGTCACGTGGTTACCGCC
CAGCTGAAGGATGTGCTGGGCATCTCAGTACCGCGTCACAAAGGTGCATT
CAAGATCATATATACCGTTATTGACGTGATCAAGGGAGTGCCACAAACGA
ATCTTGTGAACTTTGGCTTTTGTATGGCTGTGATTGCGTTCATGATGATC
TGCAATGAGATCCTAAAGCCGCGACTGAGTAAAAAGTGTCGCTTTCCCCT
GCCGGCGGAGCTGATCATGGTGATCGGTGGTACTTTAATCTCCAAATGGT
TCAACCTGTATGTCGATTACAACGTAAATCCAGTGGGAAAAATACCCAGT
GGCTTACCGGAGCCAGTTCTTCCGCGCTTGGATCTTGTACCAAAGGTGGC
CGTAGATTCAATTGCCATTGCTATCGTCACCTACTCCATAATCATGTCCA
TGGGCCTAACGTTCGCTAAGAAGCACGGATATGAGGTCAGACCAAATCAG
GAGCTGTTCGCCATGGGCATTGGAAACATGGTTGGCGGCTGTTTCTCCTG
CATTCCGATGGCGTGCTCTCTGTCAAGATCGGTAATTCAGGATCAGACTG
GTGGGGTTTCGCAGATAGCTTCATTGGTCTCCGCTTCGCTGGTGGTGGTC
ACCCTAATGTGGATCGGCCCCTTTTTCAGCAGTTTGCCAAGGTGCGTTCT
GGCTGGCGTGATTATAGTGGCACTGAAGCCGATGTTTATGCAGGCCAAGG
AATTGAAAAAGTTCTCCAAGCAGGGCAAGTTGGAAATGTTCACATGGATA
TCTACCTTCCTCTGCGTCGTTATCATCGATATTGATATTGGGCTTTTGAT
TGGCATCTGCATCTCCTTGTTGGCTCTGTATATCAAGGGACTGAAGCCGT
ACTCCTGCCTTTTGGGCTATATGCCAGAGGCTCCAGGCATCTATATGGAT
CTCAACCAGCATCGAAACGCCATGCAGGTTCCCGAAGTCCGCATCTTCCG
CTACAGTGGATCGCTTAACTTTGCCACCAGCCTGTTCTTCCGACGTGCTC
TGTACGAGGCCGTGGGCCTGGACAAGATTCCCCTAACGAAAGTCAGCAGC
AGCAATAGCAATAGTCCCAGCAAGGGCAGCAAATCGAGTTATTCCCCAGT
ATCGCAGAACGGAGGCAAGGCGATCAATGGCAAGTTAGAAGAGACGTCAG
GTGCTTTCAAGGTGCTCGTCCTGGATTTCTCCATGCTGGGACACATCGAT
GTGGCTGGATGTCGCACCCTGACGGATCTGAGCAAGGAACTGAAGGTGCG
AGGAGCTCGTTTGTTGTTGGCTAGCCCCGTAGATCGGGTATACGATACCC
TCGTGCACAGTATGGCCCTTAGCGAAGGACCTTTTGAGATCTTCCCCACC
CTGCACGATTGTGTGGAATATGCCAATGCCTGTCGAACAGCGGCAAGCTT
TCTAGACCAT
BO34330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prestin-RA | 2229 | CG5485-PA | 1..2226 | 17..2242 | 11130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prestin-RA | 3553 | CG5485-RA | 945..3170 | 17..2242 | 11130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17900158..17900901 | 1492..749 | 3720 | 100 | Minus |
| 3L | 28110227 | 3L | 17900958..17901663 | 748..43 | 3530 | 100 | Minus |
| 3L | 28110227 | 3L | 17899272..17899873 | 2242..1641 | 3010 | 100 | Minus |
| 3L | 28110227 | 3L | 17899942..17900092 | 1642..1492 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:33:18 has no hits.
BO34330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:16 Download gff for
BO34330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prestin-RA | 945..3170 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:54 Download gff for
BO34330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prestin-RA | 945..3170 | 17..2244 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:54 Download gff for
BO34330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17899269..17899872 | 1642..2244 | 99 | <- | Minus |
| 3L | 17899943..17900091 | 1493..1641 | 100 | <- | Minus |
| 3L | 17900158..17900901 | 749..1492 | 100 | <- | Minus |
| 3L | 17900958..17901663 | 43..748 | 100 | <- | Minus |
| 3L | 17901728..17901753 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:16 Download gff for
BO34330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17894828..17894853 | 17..42 | 100 | | Minus |
| arm_3L | 17892369..17892972 | 1642..2244 | 99 | <- | Minus |
| arm_3L | 17893043..17893191 | 1493..1641 | 100 | <- | Minus |
| arm_3L | 17893258..17894001 | 749..1492 | 100 | <- | Minus |
| arm_3L | 17894058..17894763 | 43..748 | 100 | <- | Minus |
BO34330.pep Sequence
Translation from 16 to 2260
> BO34330.pep
MPSDKESPETKPLNNNNTNGNGGSVPSKPKIQPKYSIHRDVLTHEVVIKQ
TGYAARDKSIPSSLRNCWRSWNFFALFTGVIPILQWLPQYSPRRDLPGDI
IAGFTVAIMNIPHGMAYGILAGVSAGNGLYMAVFPVLAYMFLGTSKHISI
GTFAVASMMTAKVVDTYANVDDHHQILPINAFGLQSNGTATASPLLLINS
SALADSVSSTTISPFQLLNSTLNADPITKIEVATSLALTVGIVNLLMAFL
RLGTLSSLLSEPLVNGFTTAAACHVVTAQLKDVLGISVPRHKGAFKIIYT
VIDVIKGVPQTNLVNFGFCMAVIAFMMICNEILKPRLSKKCRFPLPAELI
MVIGGTLISKWFNLYVDYNVNPVGKIPSGLPEPVLPRLDLVPKVAVDSIA
IAIVTYSIIMSMGLTFAKKHGYEVRPNQELFAMGIGNMVGGCFSCIPMAC
SLSRSVIQDQTGGVSQIASLVSASLVVVTLMWIGPFFSSLPRCVLAGVII
VALKPMFMQAKELKKFSKQGKLEMFTWISTFLCVVIIDIDIGLLIGICIS
LLALYIKGLKPYSCLLGYMPEAPGIYMDLNQHRNAMQVPEVRIFRYSGSL
NFATSLFFRRALYEAVGLDKIPLTKVSSSNSNSPSKGSKSSYSPVSQNGG
KAINGKLEETSGAFKVLVLDFSMLGHIDVAGCRTLTDLSKELKVRGARLL
LASPVDRVYDTLVHSMALSEGPFEIFPTLHDCVEYANACRTAASFLDH
BO34330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prestin-PA | 742 | CG5485-PA | 1..742 | 1..742 | 3795 | 100 | Plus |
| CG5002-PA | 595 | CG5002-PA | 34..463 | 78..562 | 349 | 22.9 | Plus |
| CG9702-PB | 676 | CG9702-PB | 78..526 | 81..561 | 313 | 23.5 | Plus |
| CG9702-PA | 676 | CG9702-PA | 78..526 | 81..561 | 313 | 23.5 | Plus |
| Esp-PB | 654 | CG7005-PB | 177..528 | 236..561 | 282 | 25.2 | Plus |
