BO34331.complete Sequence
2998 bp assembled on 2013-11-09
GenBank Submission: KX795625
> BO34331.complete
GAAGTTATCAGTCGACATGGAGTTGCAACTAGGACGGATGTATTACGAAG
TGTTTTGTATTTCGGCATGGATATGTCTGATGCGTCCATCTTTTGGATCC
ATTATTAAGGACTCTGTGAAATGTACGGAGGGTTCAGTAGCTGCTGACAT
TGATGACTGCGCCAGCTACTTTCAGTGTATCGACGATGAAACTGTGCACC
TAAATTGTGCCAATGGAAGTTATTTTGAAGCTAGTAATGAAATCTGTGTG
GTGGACGAGTTTGGTGTATGCCCTACTTCGCGGAGATTATGTTTCGATGG
AGATATTTTTGAGGATATAAATGATTGCATGTCCTACGTTAAGTGTATTC
GTGGAGATCTGGTAAGACAAAGGTGCCCGGCAGGGAGCAACTTTAATGTA
ATATCGAAAAACTGTCAAATGTCTCGAACTGGATCCTGTGCATCTCCAAA
AGAAATATGTTTGGAGGGGGAACTACAAGTGGACTCCGAGGATTGTGCCG
GCTATTTGGAGTGCTTGAATGGTGGCCTTGTGAAGGAGAAGTGTCCCATT
GGTAGCTACTTTGAGCCCATATTCAAACTCTGCCAGTTGGATGAGAATGG
AGTGTGTTCGTCTTCTTCAAGTGAGTGTACAGATGGAGAAGTTCGTGTGG
ATCCAAATAACTGCGCTGGCTATTTCAATTGCGAAAATGGAAGACTAATA
ACTAAAACTTGCCCCAGTGGCACATACTTTGAGCCCACATACAAAACCTG
CACTGTTGACTTAAAAGGTGTGTGTGTGGAGCCACCAGCTAAGTGCACCG
AAGGACAACTAAAAATAGATCCCAATAACTGTGCAGGATATCTGAAATGC
ATCGATGGGGAGTTTGTCGAGGAGAAGTGTCCAGGTGGTACATACTACGA
CTTCAAGCTGGAAACTTGTTTGGTGGACACTGAGGGTGTTTGTGTTACAA
TCAGAAAACTTTGTATCGAAGGACTGCGCGAAAAGGATCCCAAGGACTGC
GCTGCCTACACACAATGCATTCGAGGTAGGGTCGAAAGTGTTATGTGTGA
TTCCGGTAGATATTTTAATGTGACGCAGGGAGAATGCCTCGCCGATTTGT
ATGAAGTGTGTCTAAAGTCACGGAAAGAACATTTCAGGATTGTTGAACAT
CATCAATATGATGAAAGTACTACGCCCAATTCGTATCAGCAAACTGAGAG
TACTGATGCTGATTTCCAATCTACTGATTCTGCTCTGCAAGAGGTAACTT
CCCAAAACTCCTGTATCTTTGACTTGAACGGAGCTTGTGTAGGTCAATCC
ACAATATGCACAGAAGGGAAGAAGCAACGAGATATCAACAATTGTGCAGG
ATACCTCAAATGCATCGATGGAGAGTTTGTGGAGGAGGAGTGCCCCGAGA
GTACCTACTACGACTCCAATTTGGAAACCTGTTTAGTGGACAATTATGGT
GCTTGTGTCACAAGTACTAGTATCTGCGTCGAAGGAATTGTAGAAGAAGA
TCCGAAAGATTGCGCCGGTTACAACCAATGTGTTCGAGGTAAGGTCGAAC
CACTCAAGTGCGCATTTGGAAGGTATTTCAATGGGACCCAAGGAGAGTGC
CTCATTGATCTGGATGAAGTGTGCGCTAAGTCAAGTCAAGTTGACTATGA
CAGGGATTTAGAACAGTTTCAGTATTCTCAAAGTACAAGTGAATATTTGC
TGGAATATACAAACACGGATACTACAATTGCGGATTTTAGTACCGAAAGT
TCTAATGCTGATTTCAATCGATACACAGATTCGAATTCATATACTGATAC
GGAAAGCACTACGAATGATGTTCCTACAAGCACGGAGGTTTCTACTTTCG
ATTTGAAAACAACTGATTTAAGTCTGCAGTTCACCACTTTAGATGGAGTC
GACAATCTGGACATCAATACCGGTACCTGTGTGTATAACAATACACTGTT
TATCGAAGGAATTCGAGAGGTTAATCCCCAGGATTGCGCTGGATACATAG
AATGCTTTGGAGGTGTGGCTAAGGAACTTAAGTGTGATTCTGGCAGATAT
TTCAATGAAACCCAAAGAAATTGCTCCGTTGATGTGGATGAGATCTGTTT
AAAGTCCGATAAGACAATTGTTCTCGATTTACAAACTACTACTGAGTCCA
CTCCAAATTTCACCACCTCTGTCGACCCATTTGCCAAATGCAGGGATGGT
CAGCTCAGGTTAGATCCCAAAAACTGTGCCGGATTCCTGAAATGTGTCGA
TGGAGAGCTGAAGGAGGAAATGTGTCCCAGTGGCTTCTTCTATAATTCTA
CATCGAGCAAATGTATGGTTGATATTCGAGCCACTTGCGTCACTAATATA
AAATATTGCATAGAAGGAGTTCGCGAAGAAGATCCCAACAATTGCGCTGG
TTACAGACAATGCATTCGAGGTCTGGTTCAAAATCTGAATTGTCCCCTTG
GACAATACTTTAATGTGGCAGAAAGAGATTGTCTTATGGATGTGCATAAA
GTGTGTGCAAGAACAGAGGAGGTTTATAAATCAGATGAAGTGCAACACAA
TGACACTGGCCCACCGATGACTAAGCCCGATGAGTCCTGCATCAGGGACA
TAAATGGGGTTTGTGTTGATCCACTTGCAAAATGCAGAGAAGGGCAGCAT
AAATTAGATCCTAATAATTGCGCAGGATACCTCAAATGTCAAAATGGCGA
GCTAATTGAGGAACTTTGCCCCAATGGCTTCTACTACGATTTTCTAATGA
AAATTTGCTTGGTCGATAGGAGAGGAATTTGCGTTACTAACATACAAATT
TGCGATGAAGGAGCACTTGAAGAGGATCCCCATGACTGTGCTGGTTACAG
GCAATGTATTGATGGGCAGGTCGAAAATCTGAAATGTCCGTTTGGAACAT
ATTTTAATGTGCCCCTCAGAGATTGTCTTATTGATGTGGATGAAATCTGT
GTGAGGCCAGAATACAAATATTTCGAATATGCAAGCTTTCTAGACCAT
BO34331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31077-RB | 2967 | CG31077-PB | 1..2964 | 17..2980 | 14820 | 100 | Plus |
| CG31077-RB | 2967 | CG31077-PB | 807..1094 | 1336..1623 | 330 | 74.3 | Plus |
| CG31077-RB | 2967 | CG31077-PB | 1320..1607 | 823..1110 | 330 | 74.3 | Plus |
| CG31077-RB | 2967 | CG31077-PB | 2154..2491 | 2614..2951 | 280 | 72.2 | Plus |
| CG31077-RB | 2967 | CG31077-PB | 2598..2935 | 2170..2507 | 280 | 72.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31077-RB | 3149 | CG31077-RB | 7..2970 | 17..2980 | 14820 | 100 | Plus |
| CG31077-RB | 3149 | CG31077-RB | 813..1100 | 1336..1623 | 330 | 74.3 | Plus |
| CG31077-RB | 3149 | CG31077-RB | 1326..1613 | 823..1110 | 330 | 74.3 | Plus |
| CG31077-RB | 3149 | CG31077-RB | 2160..2497 | 2614..2951 | 280 | 72.2 | Plus |
| CG31077-RB | 3149 | CG31077-RB | 2604..2941 | 2170..2507 | 280 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26999851..27002782 | 49..2980 | 14660 | 100 | Plus |
| 3R | 32079331 | 3R | 27001972..27002309 | 2614..2951 | 280 | 72.2 | Plus |
| 3R | 32079331 | 3R | 27002416..27002753 | 2170..2507 | 280 | 72.2 | Plus |
Blast to na_te.dros performed 2014-11-28 14:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 4601..4682 | 2159..2241 | 124 | 62.7 | Plus |
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 1594..1652 | 2824..2765 | 117 | 68.3 | Minus |
BO34331.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:19 Download gff for
BO34331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31077-RB | 7..2970 | 17..2982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:55 Download gff for
BO34331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31077-RB | 7..2970 | 17..2982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:55 Download gff for
BO34331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26999758..26999791 | 17..50 | 100 | -> | Plus |
| 3R | 26999853..27002782 | 51..2982 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:19 Download gff for
BO34331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22825480..22825513 | 17..50 | 100 | -> | Plus |
| arm_3R | 22825575..22828504 | 51..2982 | 99 | | Plus |
BO34331.pep Sequence
Translation from 16 to 2998
> BO34331.pep
MELQLGRMYYEVFCISAWICLMRPSFGSIIKDSVKCTEGSVAADIDDCAS
YFQCIDDETVHLNCANGSYFEASNEICVVDEFGVCPTSRRLCFDGDIFED
INDCMSYVKCIRGDLVRQRCPAGSNFNVISKNCQMSRTGSCASPKEICLE
GELQVDSEDCAGYLECLNGGLVKEKCPIGSYFEPIFKLCQLDENGVCSSS
SSECTDGEVRVDPNNCAGYFNCENGRLITKTCPSGTYFEPTYKTCTVDLK
GVCVEPPAKCTEGQLKIDPNNCAGYLKCIDGEFVEEKCPGGTYYDFKLET
CLVDTEGVCVTIRKLCIEGLREKDPKDCAAYTQCIRGRVESVMCDSGRYF
NVTQGECLADLYEVCLKSRKEHFRIVEHHQYDESTTPNSYQQTESTDADF
QSTDSALQEVTSQNSCIFDLNGACVGQSTICTEGKKQRDINNCAGYLKCI
DGEFVEEECPESTYYDSNLETCLVDNYGACVTSTSICVEGIVEEDPKDCA
GYNQCVRGKVEPLKCAFGRYFNGTQGECLIDLDEVCAKSSQVDYDRDLEQ
FQYSQSTSEYLLEYTNTDTTIADFSTESSNADFNRYTDSNSYTDTESTTN
DVPTSTEVSTFDLKTTDLSLQFTTLDGVDNLDINTGTCVYNNTLFIEGIR
EVNPQDCAGYIECFGGVAKELKCDSGRYFNETQRNCSVDVDEICLKSDKT
IVLDLQTTTESTPNFTTSVDPFAKCRDGQLRLDPKNCAGFLKCVDGELKE
EMCPSGFFYNSTSSKCMVDIRATCVTNIKYCIEGVREEDPNNCAGYRQCI
RGLVQNLNCPLGQYFNVAERDCLMDVHKVCARTEEVYKSDEVQHNDTGPP
MTKPDESCIRDINGVCVDPLAKCREGQHKLDPNNCAGYLKCQNGELIEEL
CPNGFYYDFLMKICLVDRRGICVTNIQICDEGALEEDPHDCAGYRQCIDG
QVENLKCPFGTYFNVPLRDCLIDVDEICVRPEYKYFEYASFLDH
BO34331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31077-PB | 988 | CG31077-PB | 1..988 | 1..988 | 5436 | 100 | Plus |
| CG31077-PB | 988 | CG31077-PB | 27..881 | 195..993 | 1419 | 36.9 | Plus |
| CG17826-PA | 751 | CG17826-PA | 13..611 | 19..536 | 806 | 32 | Plus |
| CG17826-PA | 751 | CG17826-PA | 13..743 | 188..914 | 690 | 26.5 | Plus |
| CG17826-PA | 751 | CG17826-PA | 29..612 | 431..979 | 622 | 27.5 | Plus |
| CG17826-PA | 751 | CG17826-PA | 82..713 | 36..528 | 618 | 26.3 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 102..1121 | 39..977 | 515 | 22.4 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 102..1121 | 39..977 | 515 | 22.4 | Plus |
| CG43896-PC | 2113 | CG43896-PC | 102..1121 | 39..977 | 515 | 22.4 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 42..810 | 103..824 | 418 | 22.5 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 42..810 | 103..824 | 418 | 22.5 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 40..598 | 325..981 | 413 | 22.9 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 40..598 | 325..981 | 413 | 22.9 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1286..2099 | 21..774 | 354 | 22.3 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 347..1123 | 36..831 | 352 | 21.7 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 347..1123 | 36..831 | 352 | 21.7 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1024..2099 | 46..978 | 295 | 19.4 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 407..887 | 24..493 | 274 | 22.9 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 407..887 | 24..493 | 274 | 22.9 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1143..1672 | 43..528 | 227 | 22.6 | Plus |
| CG17826-PA | 751 | CG17826-PA | 506..743 | 34..245 | 217 | 25.3 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 827..1418 | 37..529 | 197 | 20.5 | Plus |
