BO34336.complete Sequence
973 bp assembled on 2013-09-16
GenBank Submission: KX797192
> BO34336.complete
GAAGTTATCAGTCGACATGAGCTCGGTACGACCACTGAATGCCGCGCTGC
AAGAGATTTGCATCAGGGAATTGAACGAGTTGCCCGCCCGTATGGCCCAG
GACATTGAGGCTCTGCGGGATTGGGTGCTGAAGCAGCCACATCTGCGGGC
CTGCACCGACGACCAGTTCCTGCTCGCCTTTCTGCGCGGCACCAAGTTCA
GTCTGGAGCGGGCCAAGGAGAAGTTCGATCGGTTCTACACGCTGCAACGA
TCCATTCCCGAGGTATTCAATGAGCGGCGCTTAGCTACCGATCCCCAGGT
GCTGGATATCGTAAGAATGGGAGTACTCCTTCAAATTCCCATGGATGCAG
ACGATCCGGGACCGCGGGTGACCATAATTCGCGCCGGTTCCTACGATACG
AGCAAACACAAGTTCCAGGACATCATTCGCGTGGGTTCCATGTTCGGTGA
GATCATGATGTTCGAGGACGACAACGCCACGGTCAGTGGCTATGTGGAGA
TAATGGACATGGCTGGCGTTACGGGGAGCCATCTCTTTGCCCTCCAGCCG
CAGTTGCTCAGTAAGTTCTCCACATACGCGGATGAGGCGATGCCGACCCG
CCAGAAGGGCATACACTTCATCAATGTTCCTGCGGCCTTTGAAACTGGAT
TCAATTCCCTGCGCTCCTTTTTCCCTGCCAAAATCAAGAGTCGGATCTCG
GTGAGCTCCGATCCGGCGGCCATATACGAGCTAGTGCGTCGCAAGTACTT
GCCCCAAGAATATGGAGGAACTGGTGGTAATCTGCAGGATATAAGCCACA
CCATGGAAGCGAAATTGTCCAGCTATGGGCCCTACTTTCGCGAAAGCCAA
AATTTCGGTGCCAATGACAAGTTGCGCGAGTTTGGAGACCATAAGCGAGG
GAACCATCGCTCCTCCTTTGGCGCTGTGGGGTCGTTTCGGAAACTGGAAA
TAGACGCAAGCTTTCTAGACCAT
BO34336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31636-RB | 942 | CG31636-PB | 1..939 | 17..955 | 4695 | 100 | Plus |
| CG31636-RA | 942 | CG31636-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
| CG33965-RA | 954 | CG33965-PA | 99..626 | 100..627 | 660 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31636-RB | 1567 | CG31636-RB | 410..1353 | 12..955 | 4705 | 99.9 | Plus |
| CG31636-RA | 1294 | CG31636-RA | 137..1080 | 12..955 | 4705 | 99.9 | Plus |
| CG33965-RA | 1026 | CG33965-RA | 121..648 | 100..627 | 660 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6657003..6657376 | 694..321 | 1870 | 100 | Minus |
| 2L | 23513712 | 2L | 6657434..6657743 | 321..12 | 1535 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6656673..6656934 | 955..694 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 1233323..1233582 | 368..627 | 505 | 79.6 | Plus |
| 3L | 28110227 | 3L | 1233002..1233208 | 100..306 | 195 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:51:09 has no hits.
BO34336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:33 Download gff for
BO34336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31636-RA | 142..1080 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:14 Download gff for
BO34336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31636-RA | 142..1080 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:14 Download gff for
BO34336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6656671..6656933 | 695..957 | 99 | <- | Minus |
| 2L | 6657003..6657375 | 322..694 | 100 | <- | Minus |
| 2L | 6657434..6657738 | 17..321 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:33 Download gff for
BO34336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6657434..6657738 | 17..321 | 100 | | Minus |
| arm_2L | 6656671..6656933 | 695..957 | 99 | <- | Minus |
| arm_2L | 6657003..6657375 | 322..694 | 100 | <- | Minus |
BO34336.pep Sequence
Translation from 16 to 973
> BO34336.pep
MSSVRPLNAALQEICIRELNELPARMAQDIEALRDWVLKQPHLRACTDDQ
FLLAFLRGTKFSLERAKEKFDRFYTLQRSIPEVFNERRLATDPQVLDIVR
MGVLLQIPMDADDPGPRVTIIRAGSYDTSKHKFQDIIRVGSMFGEIMMFE
DDNATVSGYVEIMDMAGVTGSHLFALQPQLLSKFSTYADEAMPTRQKGIH
FINVPAAFETGFNSLRSFFPAKIKSRISVSSDPAAIYELVRRKYLPQEYG
GTGGNLQDISHTMEAKLSSYGPYFRESQNFGANDKLREFGDHKRGNHRSS
FGAVGSFRKLEIDASFLDH
BO34336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31636-PB | 313 | CG31636-PB | 1..313 | 1..313 | 1612 | 100 | Plus |
| CG31636-PA | 313 | CG31636-PA | 1..313 | 1..313 | 1612 | 100 | Plus |
| CG33965-PA | 317 | CG33965-PA | 7..317 | 2..313 | 1088 | 67.3 | Plus |
| CG12926-PA | 313 | CG12926-PA | 7..313 | 2..313 | 656 | 42 | Plus |
| CG33966-PA | 310 | CG33966-PA | 1..310 | 1..313 | 649 | 40.4 | Plus |
