BO34339.complete Sequence
3607 bp assembled on 2013-11-20
GenBank Submission: KX794805
> BO34339.complete
GAAGTTATCAGTCGACATGCAGTGGAAGAAGAAGTTTACTCGATTGAAAG
CAGCTACTGGAAATTCGCGTGTGCGAAGAATGCTTTGTTGTGGACGCAGA
AAGGAAAATGGAAGATCAGTTCCTGATGTCACCGCAAGCCCGGGACGGGC
CCCGCCCGGACCACTGCCCGCCAACCAGATGCCTGCGATGGGCAACCAGC
AACACCATGGAAACCAGCAACATCATGGAAACCAGCAGCAACATCATGGC
AATCAGCACAGCAACCATCGAGGTCAGAGCGGAAGTTTGTCAAACGCCGC
CGGGGTCAAGGACCCGGTGATGCTACAGGGCGATTTTCGGAAAGTCAGCG
GAATCAGCTCAGAGATCTTTCGGCAGATAGAAGCCGTCGAGAATGACCAC
GACCCAAACACGGCGGCGGCTTTGGAGGCGGTGGAGAGACGCGGTGAGAT
GATCGTGCGCGTCCTGGAGCCGCGTTGCATGGGCAGCAAACAGGCGGTGG
ACGCTGCCCACAAGCTGATGAACAAGGCGGACGCACGGCACACCGTGCAG
CTGGTAGAAATAGTCAAGCGGCCGGGCCAGACGCTGGGCTTGTACATCCG
CGAGGGAAATGGGGCCGATCGAACTGATGGCGTCTTTATTTCGCGGATTG
CACTGGAGTCGGCTGTCTACAACAGCGGCTGCTTGCGGGTGGGCGACGAA
ATCCTTGCGGTAAATCTGGTGGACGTGACACACATGTCCTTAGACGATGT
CGTCATTATTATGTCAATTCCGCGCCGCTTGGTGCTGGCTATACGTCAGC
GGCGGGGCAATAGAGGCACAGGATCTCCTGGACCGCCAACGCTCTCTAGG
CCAGAACAGAAGCCCCCACCGGTTGTTGTCATCAAGCGAGATTTGCGAGA
CGAGGATCTGGACGAGACGGACCGGATGCCGAGGCCGCGCTCATCACGTG
ACAGACGTACAGGAGATGGTCGCGAAATGACGGAATCTCGTTCTAGGCTA
GGTCTGGGTCTTAATAATTACAGCCCGCAGTCCGAGCAGTTGGATATGTA
CTACAATACCCGCGGCGGAGGTGGAGGAGCCATGGGTGAGCCTCCAAACT
GGGGCTATAAACCACCACCGCCACCGTCTTCGGTCATTACGGAGCAACCC
ACGAAAGCACATGCTTTTGCGCCGTCGCATGCTTACTACCAAAATGCCGG
CACTCTTGAAAGCTTGGCGGAGAAGGTACATGCATTCTATCCTGGACAGC
CTGGTGGTCCGCCAGTGGGTCCCTCGAGAAGAATGTCAACGGGAACTGGA
AACGTTGGCCTCGCTCAGCAACATGCCAGATTTCCGCGATCTGGCTCAGA
TCAGCATTTACCTCGCGTAGAATATTCGGACTATTCCAATTCACTGGGGC
GGCATTCCCTTCTGCGATCAAGTTTAAAACCTGGAACGACCGGTGGAGCT
CCAATGCAGGTAGGAGTGGGAGGCACTCTTGGCCGATACGGCCGCTATGA
TCAACAGAGAGCCGGTGTATCCAAGTACGGCCCTCCATCTGGTGGAGCTC
AATCGCTGACCCGTCGTTCCAGACCAAATTTGGACTATTCCAGCGATACG
GAAGCCACAATTGGGCCCAGGCCAAGTTACTACTACTATAACAGACCTGC
CATCGGCAGTATGTCGAGGGGATCAGGTGGAGCAGGCGGAGGAGTTGGCG
CAGCTTCAACGGCTGCCTTGCTGGCTGGAGCTGCTGATCTTAACAAATTT
AACTCGTTGCCACGAGAGCGCCCCGGGACGAGACTGCAGGGAATTCGTTC
CAGAATGGGAGATCGTTTGGTGGACGAAAATGACGGAAATACTTCGGCAC
CCGAGTTCGATGTACGGAGAGGAAGGGACTTACGTCAGCGAATTACCGCC
AGTCCGTCGATATTTACGGCAGATGAATACCGCGCCTGGCTCAGAAGGGC
GCCTAGCAGTTCCGCAATTGCGGAACAAATGCGAATGACGCGGGACATGT
TTGCCCAGCCACGGGCTCAGCGATTTTCGTGTAGCGCTGAGAACATCCAT
GATGCACTGAGAAATACGGAAAGCATCTACTCCAGTAGAAACCATATTCT
TGGTACGGGCACTCTCGATCGGAACATGGGTCTTACCCGACCAATTTCAG
CACTACCCGTGCGCTCCATGTCCTCACAGCACATTGGAGGAGCGGGTTCC
ATTCGTTCGCCTAGCATACGGCGCATGCGACAGTTACTGGAGCTTTCCGC
TGGTCCCGCCAGTCCGAGCGGCAGTATCTTGAGCACCGGTGGTCATCAGA
GTCCGGCACCAACTCCAAGCGCGACCCTACCACGCCCGCACCGCCAAATC
GACATCAACCCGGCGGAGTTTGCCAAGTACAAGCTGGATAAGCCCATCGT
TGATATTGGGGGGATCTCCGGCATGTTATGGATTCATTTGCTAGCAGGTC
GCGGCCTAAGAACCGCTCCAGAGGGAGCAGCAGGAACGGCGACACAGGGC
CAAACCAGAGATCTTTACTGCGTAATCGAGTGCGATCGAGTACATAAAGC
ACGGACTGTGGTACGATCGGGTGACCTGCAGTTCGACTGGGACGAGTCGT
TTGAGCTCGACTTGGTGGGCAACAAACAGTTAGATGTACTAGTCTACTCA
TGGGACCCGCAGCACAGACACAAGCTGTGTTACCGAGGCGCAATCTCGTT
ATCGTCGATCCTCCGTCAGTCTCCACTTCATCAACTGGCCTTGAAGGTTG
AACCAAGAGGTACGATATACATTCGCATGCGGCACACGGATCCACTGGCT
CTCTACAAGAGAAGGGGACTTCCGAGCCTGAGAGCAGGTTACCCTACGCT
CTTCGGCGCTGATTTGGAAACGGTGGTGAATCGGGAGTCTAAGAATGCTC
CCGGAAGTGCACCTGTTCCCATCGTATTAAGGCGCTGTGTGGAGGAGGTG
GAACGGCGTGGTCTTGATATAATCGGGTTGTACCGCCTGTGCGGCTCGGC
TACCAAGAAGCGATTGCTACGCGAGGCCTTTGAGCGCAATAGCCGTGCAG
TGGAATTGACCCCGGAACATGTTCCTGACATCAACGTCATCACCGGCGTC
CTCAAGGATTACCTTAGGGAGCTGCCCGAGCCGCTGTTCACGCGCTGTCT
TTTCCAGATGACGGTGGATGCCTTAGCTGTCTGCCTGCCAGATGACCCAG
AGGGCAATGCGAAACTGATGCTTAGCATACTCGACTGCCTACCGCGGGCG
AACAGGGCCACCCTGGTATTCCTTCTTGATCACCTCTCGCTGGTCGTTTC
AAACTCGGAGCGGAACAAGATGTCAGCCCAGGCGTTGGCCACCGTGATGG
GCCCACCGCTGATGCTGCATTCGGCGAGTGCGCAGCCGGGTGCTGACATC
GATCACGCTCAGCCGATCGCGGTGCTTAAGTATCTTCTGCAGATCTGGCC
GCAGCCGCAGGCGCAGCATCAGCAGATGGCGCAGCACATGGGCGGCGCTG
CGGGGGCAATGATGGGCGGTTTGGTCACCGCCGGGAGCATGAGCAATATG
GCCGGTGTTGCTTCAGGTAACGTACTCCCAGCGTCCGATGCAAGCTTTCT
AGACCAT
BO34339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP100F-RB | 3576 | CG1976-PB | 1..3573 | 17..3589 | 17865 | 100 | Plus |
| RhoGAP100F-RD | 5601 | CG1976-PD | 1..3552 | 17..3568 | 17760 | 100 | Plus |
| RhoGAP100F-RI | 5478 | CG1976-PI | 1..3552 | 17..3568 | 17760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP100F-RB | 4652 | CG1976-RB | 680..4252 | 17..3589 | 17865 | 100 | Plus |
| RhoGAP100F-RD | 11833 | CG1976-RD | 1432..4983 | 17..3568 | 17760 | 100 | Plus |
| RhoGAP100F-RI | 11710 | CG1976-RI | 1432..4983 | 17..3568 | 17760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31835543..31836653 | 2066..3176 | 5555 | 100 | Plus |
| 3R | 32079331 | 3R | 31834372..31835477 | 960..2065 | 5530 | 100 | Plus |
| 3R | 32079331 | 3R | 31833395..31833983 | 102..690 | 2945 | 100 | Plus |
| 3R | 32079331 | 3R | 31836871..31837204 | 3256..3589 | 1670 | 100 | Plus |
| 3R | 32079331 | 3R | 31834037..31834312 | 688..963 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 31818032..31818119 | 17..104 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 31836719..31836802 | 3174..3257 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1520..1591 | 192..266 | 159 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1162 | 192..277 | 146 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6788 | 195..265 | 142 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6886 | 195..267 | 133 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6809 | 192..265 | 129 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1167 | 194..261 | 129 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6858 | 192..258 | 124 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1185 | 195..290 | 122 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2838 | 192..262 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6825 | 192..258 | 118 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6921 | 193..246 | 117 | 68.5 | Plus |
BO34339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-20 11:38:37 Download gff for
BO34339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP100F-RB | 680..4252 | 17..3591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:47 Download gff for
BO34339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP100F-RB | 680..4252 | 17..3591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:47 Download gff for
BO34339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31818032..31818118 | 17..103 | 100 | -> | Plus |
| 3R | 31833397..31833981 | 104..688 | 100 | -> | Plus |
| 3R | 31834038..31834311 | 689..962 | 100 | -> | Plus |
| 3R | 31834375..31835477 | 963..2065 | 100 | -> | Plus |
| 3R | 31835543..31836653 | 2066..3176 | 100 | -> | Plus |
| 3R | 31836722..31836801 | 3177..3256 | 100 | -> | Plus |
| 3R | 31836872..31837204 | 3257..3591 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-20 11:38:37 Download gff for
BO34339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27643754..27643840 | 17..103 | 100 | -> | Plus |
| arm_3R | 27659119..27659703 | 104..688 | 100 | -> | Plus |
| arm_3R | 27659760..27660033 | 689..962 | 100 | -> | Plus |
| arm_3R | 27660097..27661199 | 963..2065 | 100 | -> | Plus |
| arm_3R | 27661265..27662375 | 2066..3176 | 100 | -> | Plus |
| arm_3R | 27662444..27662523 | 3177..3256 | 100 | -> | Plus |
| arm_3R | 27662594..27662926 | 3257..3591 | 99 | | Plus |
BO34339.pep Sequence
Translation from 16 to 3607
> BO34339.pep
MQWKKKFTRLKAATGNSRVRRMLCCGRRKENGRSVPDVTASPGRAPPGPL
PANQMPAMGNQQHHGNQQHHGNQQQHHGNQHSNHRGQSGSLSNAAGVKDP
VMLQGDFRKVSGISSEIFRQIEAVENDHDPNTAAALEAVERRGEMIVRVL
EPRCMGSKQAVDAAHKLMNKADARHTVQLVEIVKRPGQTLGLYIREGNGA
DRTDGVFISRIALESAVYNSGCLRVGDEILAVNLVDVTHMSLDDVVIIMS
IPRRLVLAIRQRRGNRGTGSPGPPTLSRPEQKPPPVVVIKRDLRDEDLDE
TDRMPRPRSSRDRRTGDGREMTESRSRLGLGLNNYSPQSEQLDMYYNTRG
GGGGAMGEPPNWGYKPPPPPSSVITEQPTKAHAFAPSHAYYQNAGTLESL
AEKVHAFYPGQPGGPPVGPSRRMSTGTGNVGLAQQHARFPRSGSDQHLPR
VEYSDYSNSLGRHSLLRSSLKPGTTGGAPMQVGVGGTLGRYGRYDQQRAG
VSKYGPPSGGAQSLTRRSRPNLDYSSDTEATIGPRPSYYYYNRPAIGSMS
RGSGGAGGGVGAASTAALLAGAADLNKFNSLPRERPGTRLQGIRSRMGDR
LVDENDGNTSAPEFDVRRGRDLRQRITASPSIFTADEYRAWLRRAPSSSA
IAEQMRMTRDMFAQPRAQRFSCSAENIHDALRNTESIYSSRNHILGTGTL
DRNMGLTRPISALPVRSMSSQHIGGAGSIRSPSIRRMRQLLELSAGPASP
SGSILSTGGHQSPAPTPSATLPRPHRQIDINPAEFAKYKLDKPIVDIGGI
SGMLWIHLLAGRGLRTAPEGAAGTATQGQTRDLYCVIECDRVHKARTVVR
SGDLQFDWDESFELDLVGNKQLDVLVYSWDPQHRHKLCYRGAISLSSILR
QSPLHQLALKVEPRGTIYIRMRHTDPLALYKRRGLPSLRAGYPTLFGADL
ETVVNRESKNAPGSAPVPIVLRRCVEEVERRGLDIIGLYRLCGSATKKRL
LREAFERNSRAVELTPEHVPDINVITGVLKDYLRELPEPLFTRCLFQMTV
DALAVCLPDDPEGNAKLMLSILDCLPRANRATLVFLLDHLSLVVSNSERN
KMSAQALATVMGPPLMLHSASAQPGADIDHAQPIAVLKYLLQIWPQPQAQ
HQQMAQHMGGAAGAMMGGLVTAGSMSNMAGVASGNVLPASDASFLDH
BO34339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP100F-PB | 1191 | CG1976-PB | 1..1191 | 1..1191 | 6206 | 100 | Plus |
| RhoGAP100F-PD | 1866 | CG1976-PD | 1..1184 | 1..1184 | 6171 | 100 | Plus |
| RhoGAP100F-PI | 1825 | CG1976-PI | 1..1184 | 1..1184 | 6171 | 100 | Plus |
| RhoGAP100F-PJ | 1297 | CG1976-PJ | 1..1183 | 1..1183 | 6165 | 100 | Plus |
| RhoGAP100F-PC | 1855 | CG1976-PC | 17..1173 | 28..1184 | 6024 | 100 | Plus |
