BO34340.complete Sequence
2785 bp assembled on 2013-11-09
GenBank Submission: KX796468
> BO34340.complete
GAAGTTATCAGTCGACATGTTAAAACCTGATAAAATGGGCACGTTAACCG
ATTTCGGACAGATAGCTTTGAAATGGGATCCCAAAAATTTGGAAATTCGC
ACAATGTCAGTTGAAAAAACACTTGAACCCCTTGTATTACAAGTAACTAC
TCTTGTAAATACCAAGGGCCCAAGCAAAAAGAAAAAAGGAAAATCAAAGC
GGGCCAGCGCATTAGTTGCAGCTGTTGAAAAAGCTACAGAAAATTTTATT
CAAAAAGGTGAACAGATCGCTTACGAGAACCCAGACATTACACAAGAAAT
GTTAACAGCTGTGGATGAAGTAAAAAAAACTGGAGATGCTATGAGCATTG
CAGCCAGAGAATTTTCTGAAGATCCGTGCAGTTCCCTGAAGAGAGGAAAT
ATGGTGCGCGCAGCTAGGAATCTGTTGTCAGCTGTAACCCGCTTGCTGAT
TTTAGCTGATATGGTTGATGTACATTTGCTCTTAAAATCACTCCACATTG
TCGAAGATGATCTAAACAAACTCAAAAACGCTTCGAGTCAGGACGAGCTT
ATGGATAATATGAGGCAATTCGGACGCAATGCAGGAGAACTTATAAAACA
GGCAGCCAAACGTCAGCAAGAACTTAAGGATCCCCAATTAAGGGACGATT
TAGCAGCTGCTCGGGCGATGCTTAAAAAACATTCAACTATGCTGTTAACT
GCATCAAAAGTATACGTTCGTCATCCGGAACTAGATCTAGCAAAAGTAAA
TCGCGATTTCATTCTAAAACAAGTTTGCGATGCTGTAAATACTATTAGCG
ATGTTGCCCAAGGAAAGTCATCCCAACCGACAGATATATACAGTGGAGCG
GGAGAGCTGGCTGCAGCATTAGACGACTTTGACGAAGGAATTGTTATGGA
TCCCATGACCTACAGCGAAAAGCGTTCACGTCAATTGCTCGAAGAGCGTC
TGGAAAGTATTATTAGTGCAGCTGCATTGATGGCGGATGCAGATTGTACT
CGAGACGAGAGACGAGAGAGAATTGTGGCCGAATGCAATGCTGTGCGACA
GGCTTTACAGGATTTGTTATCTGAATATATGTCAAACATGAGTCAAAAAG
ATAACAGCCCAGGACTCTCTCGAGCGATTGATCAAATGTGTCGAAAGACT
CGCGACCTAAGAAGGCAATTGCGAAAGGCTGTTGTGGATCATGTTTCGGA
CTCTTTTTTGGAGACTACAACTCCTTTGCTAGATTTAATTGAAGCTGCAA
AATCGGGTAATGAAAAAAAAGTTCGGGAAAAGTCCGAAATATTCACCAAG
CACGCTGAAAAACTAGTTGAAGTAGCAAATTTAGTATGTAGCATGTCAAA
CAATGAAGATGGTGTTAAAATGGTTCGATATGCTGCTGCTCAAATTGAAA
GTCTTTGTCCGCAAGTAATAAATGCAGCATCGATATTGACTGTTAGACCG
AATTCAAAAGTAGCTCAAGAAAATATGACTACTTATCGACAAGCCTGGGA
GGTGCAAGTTCGTATTTTAACCGAGGCAGTGGATGATATTACAACAATTG
ACGACTTTTTAGCAGTATCTGAGAATCACATTCTTGAAGATGTAAACAAA
TGTGTAATGGCTTTACAAGTTGGTGATGCCAGGGATTTGCGTGCAACTGC
TGGTGCTATTCAAGGTCGATCATCACGAGTTTGTAATGTTGTTGAAGCTG
AAATGGATAATTATGAACCATGTATTTACACCAAACGAGTCTTAGAAGCA
GTCAAAGTTCTACGAGATCAAGTTATGATGAAATTTGACCAACGTGTAGG
AGCAGCCGTTGGAGCCCTTTCAAATAACTCCAATAAGGATGTTGACGAAA
ATGACTTCATTGATGCTTCTCGTTTGGTTTACGACGGAGTTCGTGAAATT
CGAAGAGCTGTTTTAATGAATCGAAGCTCGGAAGACCTTGATACAGATAC
TGAATTTGAGCCAGTTGAAGACTTAACCTTGGAAACTCGAAGTCGATCAA
GTGCTCATACCGGCGATCAAACCGTTGACGAATATCCCGATATAAGTGGC
ATATGTACAGCTCGAGAAGCAATGCGAAAAATGACGGAAGAAGACAAACA
AAAAATTGCTCAGCAAGTGGAGTTATTCCGTAGGGAAAAACTAACTTTTG
ATTCAGAAGTTGCTAAATGGGATGACACTGGAAATGACATTATTTTTCTG
GCCAAACATATGTGCATGATTATGATGGAAATGACGGATTTTACCAGAGG
ACGAGGACCTTTAAAAACTACTATGGATGTTATTAACGCAGCTAAAAAAA
TTTCGGAAGCTGGTACAAAGCTGGATAAACTAACCAGGGAAATAGCAGAG
CAATGCCCAGAAAGCAGCACGAAAAAGGACCTTTTAGCGTATTTGCAACG
CATTGCCCTGTATTGTCATCAAATCCAAATAACTTCAAAAGTAAAAGCAG
ACGTTCAAAATATAAGCGGCGAACTTATAGTTTCTGGGCTGGACAGCGCT
ACATCGTTAATTCAAGCTGCTAAAAATTTAATGAATGCCGTTGTATTAAC
GGTAAAGTACTCATATGTGGCATCAACAAAATATACCAGGCAAGGAACAG
TGTCTTCTCCAATTGTTGTATGGAAGATGAAAGCACCAGAAAAAAAACCA
TTGGTCAGGCCTGAAAAACCAGAAGAAGTACGGGCCAAAGTTCGCAAGGG
ATCTCAAAAAAAGGTTCAAAACCCTATACATGCATTATCTGAATTCCAGA
GTCCTGCTGACGCTGTTGCAAGCTTTCTAGACCAT
BO34340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Cat-RA | 2754 | CG17947-PA | 1..2751 | 17..2767 | 13755 | 100 | Plus |
| alpha-Cat-RB | 1119 | CG17947-PB | 1..1077 | 17..1093 | 5370 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Cat-RA | 3000 | CG17947-RA | 55..2805 | 17..2767 | 13755 | 100 | Plus |
| alpha-Cat-RB | 3487 | CG17947-RB | 1613..3292 | 1088..2767 | 8400 | 100 | Plus |
| alpha-Cat-RB | 3487 | CG17947-RB | 55..1131 | 17..1093 | 5370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23328709..23329398 | 1777..1088 | 3435 | 99.9 | Minus |
| 3L | 28110227 | 3L | 23334364..23334742 | 565..187 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 23330697..23331016 | 884..565 | 1600 | 100 | Minus |
| 3L | 28110227 | 3L | 23319234..23319477 | 2488..2245 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 23329880..23330089 | 1093..884 | 1035 | 99.5 | Minus |
| 3L | 28110227 | 3L | 23325642..23325823 | 2247..2066 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 23337870..23338046 | 193..17 | 870 | 99.4 | Minus |
| 3L | 28110227 | 3L | 23318841..23319002 | 2767..2606 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 23327494..23327647 | 1924..1771 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 23319061..23319178 | 2605..2488 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 23326688..23326760 | 1997..1925 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 23325888..23325956 | 2066..1998 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:33:26 has no hits.
BO34340.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:21 Download gff for
BO34340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Cat-RA | 60..2805 | 22..2769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:57 Download gff for
BO34340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Cat-RA | 60..2805 | 22..2769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:57 Download gff for
BO34340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23326688..23326760 | 1925..1997 | 100 | <- | Minus |
| 3L | 23327494..23327645 | 1773..1924 | 100 | <- | Minus |
| 3L | 23329886..23330089 | 884..1087 | 100 | <- | Minus |
| 3L | 23330698..23331015 | 566..883 | 100 | <- | Minus |
| 3L | 23325642..23325823 | 2066..2247 | 100 | <- | Minus |
| 3L | 23334364..23334740 | 189..565 | 100 | <- | Minus |
| 3L | 23337875..23338041 | 22..188 | 100 | | Minus |
| 3L | 23325889..23325956 | 1998..2065 | 100 | <- | Minus |
| 3L | 23318839..23319002 | 2606..2769 | 98 | <- | Minus |
| 3L | 23319061..23319177 | 2489..2605 | 100 | <- | Minus |
| 3L | 23319234..23319474 | 2248..2488 | 100 | <- | Minus |
| 3L | 23328714..23329398 | 1088..1772 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:21 Download gff for
BO34340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23311939..23312102 | 2606..2769 | 98 | <- | Minus |
| arm_3L | 23312161..23312277 | 2489..2605 | 100 | <- | Minus |
| arm_3L | 23312334..23312574 | 2248..2488 | 100 | <- | Minus |
| arm_3L | 23318742..23318923 | 2066..2247 | 100 | <- | Minus |
| arm_3L | 23318989..23319056 | 1998..2065 | 100 | <- | Minus |
| arm_3L | 23319788..23319860 | 1925..1997 | 100 | <- | Minus |
| arm_3L | 23320594..23320745 | 1773..1924 | 100 | <- | Minus |
| arm_3L | 23321814..23322498 | 1088..1772 | 100 | <- | Minus |
| arm_3L | 23322986..23323189 | 884..1087 | 100 | <- | Minus |
| arm_3L | 23323798..23324115 | 566..883 | 100 | <- | Minus |
| arm_3L | 23327464..23327840 | 189..565 | 100 | <- | Minus |
| arm_3L | 23330975..23331141 | 22..188 | 100 | | Minus |
BO34340.pep Sequence
Translation from 16 to 2785
> BO34340.pep
MLKPDKMGTLTDFGQIALKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTK
GPSKKKKGKSKRASALVAAVEKATENFIQKGEQIAYENPDITQEMLTAVD
EVKKTGDAMSIAAREFSEDPCSSLKRGNMVRAARNLLSAVTRLLILADMV
DVHLLLKSLHIVEDDLNKLKNASSQDELMDNMRQFGRNAGELIKQAAKRQ
QELKDPQLRDDLAAARAMLKKHSTMLLTASKVYVRHPELDLAKVNRDFIL
KQVCDAVNTISDVAQGKSSQPTDIYSGAGELAAALDDFDEGIVMDPMTYS
EKRSRQLLEERLESIISAAALMADADCTRDERRERIVAECNAVRQALQDL
LSEYMSNMSQKDNSPGLSRAIDQMCRKTRDLRRQLRKAVVDHVSDSFLET
TTPLLDLIEAAKSGNEKKVREKSEIFTKHAEKLVEVANLVCSMSNNEDGV
KMVRYAAAQIESLCPQVINAASILTVRPNSKVAQENMTTYRQAWEVQVRI
LTEAVDDITTIDDFLAVSENHILEDVNKCVMALQVGDARDLRATAGAIQG
RSSRVCNVVEAEMDNYEPCIYTKRVLEAVKVLRDQVMMKFDQRVGAAVGA
LSNNSNKDVDENDFIDASRLVYDGVREIRRAVLMNRSSEDLDTDTEFEPV
EDLTLETRSRSSAHTGDQTVDEYPDISGICTAREAMRKMTEEDKQKIAQQ
VELFRREKLTFDSEVAKWDDTGNDIIFLAKHMCMIMMEMTDFTRGRGPLK
TTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKKDLLAYLQRIALYC
HQIQITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKYSY
VASTKYTRQGTVSSPIVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKV
QNPIHALSEFQSPADAVASFLDH
BO34340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Cat-PA | 917 | CG17947-PA | 1..917 | 1..917 | 4581 | 100 | Plus |
| alpha-Cat-PB | 372 | CG17947-PB | 1..359 | 1..359 | 1773 | 99.7 | Plus |
| Vinc-PC | 961 | CG3299-PC | 326..957 | 252..874 | 348 | 24.5 | Plus |
| Vinc-PB | 961 | CG3299-PB | 326..957 | 252..874 | 348 | 24.5 | Plus |
| Vinc-PA | 961 | CG3299-PA | 326..957 | 252..874 | 348 | 24.5 | Plus |
