BO34342.complete Sequence
790 bp assembled on 2013-09-16
GenBank Submission: KX796296
> BO34342.complete
GAAGTTATCAGTCGACATGGCTCAGCGATACGATCGCGCGGTGACCATTT
ACTCACCCGACGGTCACCTGCTGCAGGTGGAGTACGCCCAGGAGGCCGTC
CGAAGGGGTTCCACTGTGATGGGTCTGCGCACCAACAACGCCATTGTAAT
CGGCGTGGAGAAGCGCTCCGTGGGCGACTTGCAGGAGGAGCGCATGGTGC
GCAAGATTTGCATGCTCGACGACCACGTGGTGATGACTTTTTCGGGTCTC
ACCGCGGACGCACGGATCCTGGTAAGCCGCGCCCAAATGGAGGCCCAGAG
CCATCGTCTGAATTTCGAGAAGCCCACGACCGTGGAGTACATAACCCGAT
ACATAGCCCAGCTGAAACAGAACTACACGCAGAGCAATGGGAGGCGTCCA
TTTGGATTGTCCTGTCTGGTTGGGGGCTTCGACGAGGATGGCACTCCACA
CCTGTTCCAAACGGATCCCTCGGGCATCTTCTACGAGTGGAGGGCCAACA
CCACCGGCCGCTCAAGCCAGCCGGTCCGCGATTACATGGAGAAGCACGCG
GACGAGATTCTGACCATCGCCGACGAGGCAGCGGCCATCAAGCACATAGT
CCGCACCCTGGTCAGCGTGTCCTCGCTCAACCACACCCAAATGGAGGTGG
CTGTGCTCAAGTACCGCCAGCCACTGCGTATGATTGATCACCAGGTCCTG
GCCGATCTGGAGCGAACCGTTCGCAGGGAAATTGAAGACGAGGCCGAGGC
CAGTCGGCGGCCCCGTGCTCCCGCAAGCTTTCTAGACCAT
BO34342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T2-RB | 759 | CG4569-PB | 1..756 | 17..772 | 3765 | 99.9 | Plus |
| Prosalpha4T2-RA | 759 | CG4569-PA | 1..756 | 17..772 | 3765 | 99.9 | Plus |
| Prosalpha4-RA | 750 | CG3422-PA | 13..491 | 29..507 | 865 | 78.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T2-RB | 1254 | CG4569-RB | 91..846 | 17..772 | 3765 | 99.9 | Plus |
| Prosalpha4T2-RA | 1169 | CG4569-RA | 91..846 | 17..772 | 3765 | 99.9 | Plus |
| Prosalpha4-RA | 1176 | CG3422-RA | 161..639 | 29..507 | 865 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24501188..24501612 | 772..348 | 2110 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24501792..24502022 | 348..118 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 24502086..24502187 | 118..17 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 20748547..20748991 | 488..44 | 425 | 73 | Minus |
| X | 23542271 | X | 16276630..16276824 | 152..346 | 390 | 80 | Plus |
| X | 23542271 | X | 16276891..16277050 | 348..507 | 305 | 79.4 | Plus |
| X | 23542271 | X | 16276430..16276517 | 29..116 | 245 | 85.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:51:41 has no hits.
BO34342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:47 Download gff for
BO34342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4T2-RA | 91..846 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:22 Download gff for
BO34342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4T2-RA | 91..846 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:22 Download gff for
BO34342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24501792..24502021 | 119..348 | 100 | <- | Minus |
| 2R | 24502086..24502187 | 17..118 | 100 | | Minus |
| 2R | 24501186..24501611 | 349..774 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:47 Download gff for
BO34342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20388709..20389134 | 349..774 | 99 | <- | Minus |
| arm_2R | 20389315..20389544 | 119..348 | 100 | <- | Minus |
| arm_2R | 20389609..20389710 | 17..118 | 100 | | Minus |
BO34342.pep Sequence
Translation from 16 to 790
> BO34342.pep
MAQRYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKR
SVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNF
EKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPHLFQTD
PSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTLVS
VSSLNHTQMEVAVLKYRQPLRMIDHQVLADLERTVRREIEDEAEASRRPR
APASFLDH
BO34342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T2-PB | 252 | CG4569-PB | 1..252 | 1..252 | 1285 | 100 | Plus |
| Prosalpha4T2-PA | 252 | CG4569-PA | 1..252 | 1..252 | 1285 | 100 | Plus |
| Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..250 | 809 | 60.4 | Plus |
| Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..250 | 726 | 56.3 | Plus |
| Prosalpha2-PA | 234 | CG5266-PA | 4..186 | 3..186 | 358 | 37.5 | Plus |
