BO34343.complete Sequence
580 bp assembled on 2013-09-16
GenBank Submission: KX797053
> BO34343.complete
GAAGTTATCAGTCGACATGGTTTGGATTTGGAGCCTAATTGCACTCGGAA
TAGTTGTTGGCGCAACGGGGGAGAATGGGAGTAAACCGAATACCACCGAA
CCGACAACGACGGCGCCATCCTCACGAACTCCTGAAACAACTACTGTGAG
TCCCTACACTGCACTCGATAAGACAATAACCGATGATCTTCAGAATATTC
TAACCACATATGAGCGTGAATGCATTGGTAATTCTGAGTTCACACGTAAT
CTTGACCTCATACGCATCGCGGTAAAATGGGACCAGGGTCGTTTGAGAGA
AAAGATAGAAGCACGAAGAGACTTTGATGTGTACAATGAACAACGCATTT
TAATTGAACGACAAATTGATGAGCGCATAGAGGCCCTCAATAATATCCTG
CCTACCCAGGAACCGAATAGTTATTGCTCAGAATTTTACTTGAAGCAAAG
AGAAGCTCTTAGGAATGCTAAATCACTTTCGAATCAAGATAAATCAAACA
CTTTAATAATTAACAAAGCAATTTGCACTATCAATGATAATTATAATGAT
TATTTTCTTTACGCAAGCTTTCTAGACCAT
BO34343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43074-RA | 549 | CG43074-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43074-RA | 677 | CG43074-RA | 30..579 | 13..562 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3483930..3484380 | 562..112 | 2255 | 100 | Minus |
3L | 28110227 | 3L | 3484569..3484624 | 68..13 | 280 | 100 | Minus |
3L | 28110227 | 3L | 3484457..3484503 | 113..67 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 5562..5677 | 431..545 | 127 | 61.3 | Plus |
BO34343.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:50 Download gff for
BO34343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43074-RA | 34..579 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:24 Download gff for
BO34343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43074-RA | 34..579 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:24 Download gff for
BO34343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3483928..3484379 | 113..564 | 99 | <- | Minus |
3L | 3484458..3484502 | 68..112 | 100 | <- | Minus |
3L | 3484570..3484620 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:50 Download gff for
BO34343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3483928..3484379 | 113..564 | 99 | <- | Minus |
arm_3L | 3484458..3484502 | 68..112 | 100 | <- | Minus |
arm_3L | 3484570..3484620 | 17..67 | 100 | | Minus |
BO34343.pep Sequence
Translation from 16 to 580
> BO34343.pep
MVWIWSLIALGIVVGATGENGSKPNTTEPTTTAPSSRTPETTTVSPYTAL
DKTITDDLQNILTTYERECIGNSEFTRNLDLIRIAVKWDQGRLREKIEAR
RDFDVYNEQRILIERQIDERIEALNNILPTQEPNSYCSEFYLKQREALRN
AKSLSNQDKSNTLIINKAICTINDNYNDYFLYASFLDH
BO34343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43074-PA | 182 | CG43074-PA | 1..182 | 1..182 | 946 | 100 | Plus |
CG43090-PA | 169 | CG43090-PA | 1..144 | 1..170 | 195 | 30.6 | Plus |
CG17472-PA | 159 | CG17472-PA | 21..157 | 47..181 | 166 | 29.5 | Plus |