Clone BO34343 Report

Search the DGRC for BO34343

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG43074-RA
Protein status:BO34343.pep: Imported from assembly
Sequenced Size:580

Clone Sequence Records

BO34343.complete Sequence

580 bp assembled on 2013-09-16

GenBank Submission: KX797053

> BO34343.complete
GAAGTTATCAGTCGACATGGTTTGGATTTGGAGCCTAATTGCACTCGGAA
TAGTTGTTGGCGCAACGGGGGAGAATGGGAGTAAACCGAATACCACCGAA
CCGACAACGACGGCGCCATCCTCACGAACTCCTGAAACAACTACTGTGAG
TCCCTACACTGCACTCGATAAGACAATAACCGATGATCTTCAGAATATTC
TAACCACATATGAGCGTGAATGCATTGGTAATTCTGAGTTCACACGTAAT
CTTGACCTCATACGCATCGCGGTAAAATGGGACCAGGGTCGTTTGAGAGA
AAAGATAGAAGCACGAAGAGACTTTGATGTGTACAATGAACAACGCATTT
TAATTGAACGACAAATTGATGAGCGCATAGAGGCCCTCAATAATATCCTG
CCTACCCAGGAACCGAATAGTTATTGCTCAGAATTTTACTTGAAGCAAAG
AGAAGCTCTTAGGAATGCTAAATCACTTTCGAATCAAGATAAATCAAACA
CTTTAATAATTAACAAAGCAATTTGCACTATCAATGATAATTATAATGAT
TATTTTCTTTACGCAAGCTTTCTAGACCAT

BO34343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG43074-RA 549 CG43074-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG43074-RA 677 CG43074-RA 30..579 13..562 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3483930..3484380 562..112 2255 100 Minus
3L 28110227 3L 3484569..3484624 68..13 280 100 Minus
3L 28110227 3L 3484457..3484503 113..67 235 100 Minus
Blast to na_te.dros performed 2014-11-28 13:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 5562..5677 431..545 127 61.3 Plus

BO34343.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:50 Download gff for BO34343.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 34..579 17..564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:24 Download gff for BO34343.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 34..579 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:24 Download gff for BO34343.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3483928..3484379 113..564 99 <- Minus
3L 3484458..3484502 68..112 100 <- Minus
3L 3484570..3484620 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:50 Download gff for BO34343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3483928..3484379 113..564 99 <- Minus
arm_3L 3484458..3484502 68..112 100 <- Minus
arm_3L 3484570..3484620 17..67 100   Minus

BO34343.pep Sequence

Translation from 16 to 580

> BO34343.pep
MVWIWSLIALGIVVGATGENGSKPNTTEPTTTAPSSRTPETTTVSPYTAL
DKTITDDLQNILTTYERECIGNSEFTRNLDLIRIAVKWDQGRLREKIEAR
RDFDVYNEQRILIERQIDERIEALNNILPTQEPNSYCSEFYLKQREALRN
AKSLSNQDKSNTLIINKAICTINDNYNDYFLYASFLDH

BO34343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG43074-PA 182 CG43074-PA 1..182 1..182 946 100 Plus
CG43090-PA 169 CG43090-PA 1..144 1..170 195 30.6 Plus
CG17472-PA 159 CG17472-PA 21..157 47..181 166 29.5 Plus