BO34345.complete Sequence
946 bp assembled on 2013-09-16
GenBank Submission: KX794228
> BO34345.complete
GAAGTTATCAGTCGACATGCGCTCCCTTTGGCTGCTGCTCGGCTTGGGCC
TGCTGGCTGTGAGCCACGTCCAGGCCTCTACGGAGTTTTCCGAAGATCTG
CTGGATGAGGACCTCGACCTGTCCGACATCGATGAGAACGAAGAGGAGTT
CCTGCGCCTGCTGGAGGAGAAGAACAAGATCAAGGATATTGAGCGCGAGA
ATGAGATTGCCACCAAGCTGGCCGAAGTGCAGCACAATCTACTCAATCCC
GTTGTCGAGGTGGATCTGTGCGAAACGATGAGCTGCGGAGCCGGTCGCAT
CTGCCAGATGCACGACGAGAAGCCCAAATGCGTGTGCATTCCGGAGTGCC
CGGAGGAGGTGGACACTCGCCGCCTGGTCTGCACTAATACCAACGAGACC
TGGCCGTCGGACTGCTCTGTGTATCAGCAGCGCTGCTGGTGCGACAGCGG
CGAGCCCGGCTGCACCAATCCGGACAACGCGCACATGCACATCGACTACT
ACGGCGCTTGCCACGAGCCCAGGAGCTGCGAGGGCGAGGACCTGAAGGAC
TTCCCCAGGCGCATGCGCGACTGGCTGTTCAACGTGATGCGCGACCTGGC
CGAGCGCGACGAGCTGACCGAGCACTACATGCAGATGGAGCTGGAGGCGG
AGACCAACAACTCGCGTCGCTGGTCGAACGCCGCCGTGTGGAAGTGGTGC
GACCTGGACGGCGATACCGATCGCTCCGTCTCGCGCCACGAGCTCTTCCC
CATCCGTGCTCCGCTGGTCAGTCTCGAGCACTGCATCGCACCCTTCCTCG
AGTCCTGCGACTCCAACAAGGACCATCGCATCACCCTGGTGGAGTGGGGC
GCCTGCCTGGAGCTGGATCCCGAGGACCTCAAGGAGCGTTGCGACGACGT
CCAGCGGGCTCAGCCCCATCTTCTGGGTGCAAGCTTTCTAGACCAT
BO34345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-RB | 915 | CG6378-PB | 1..912 | 17..928 | 4545 | 99.9 | Plus |
| BM-40-SPARC-RA | 915 | CG6378-PA | 1..912 | 17..928 | 4545 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-RB | 1131 | CG6378-RB | 72..988 | 12..928 | 4555 | 99.8 | Plus |
| BM-40-SPARC-RA | 1143 | CG6378-RA | 84..1000 | 12..928 | 4555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26869381..26870132 | 928..177 | 3745 | 99.9 | Minus |
| 3R | 32079331 | 3R | 26870193..26870359 | 178..12 | 820 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:51:53 has no hits.
BO34345.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:52 Download gff for
BO34345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BM-40-SPARC-RA | 89..1000 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:27 Download gff for
BO34345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BM-40-SPARC-RA | 89..1000 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:27 Download gff for
BO34345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26869379..26870130 | 179..930 | 99 | <- | Minus |
| 3R | 26870193..26870354 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:52 Download gff for
BO34345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22695101..22695852 | 179..930 | 99 | <- | Minus |
| arm_3R | 22695915..22696076 | 17..178 | 100 | | Minus |
BO34345.pep Sequence
Translation from 16 to 946
> BO34345.pep
MRSLWLLLGLGLLAVSHVQASTEFSEDLLDEDLDLSDIDENEEEFLRLLE
EKNKIKDIERENEIATKLAEVQHNLLNPVVEVDLCETMSCGAGRICQMHD
EKPKCVCIPECPEEVDTRRLVCTNTNETWPSDCSVYQQRCWCDSGEPGCT
NPDNAHMHIDYYGACHEPRSCEGEDLKDFPRRMRDWLFNVMRDLAERDEL
TEHYMQMELEAETNNSRRWSNAAVWKWCDLDGDTDRSVSRHELFPIRAPL
VSLEHCIAPFLESCDSNKDHRITLVEWGACLELDPEDLKERCDDVQRAQP
HLLGASFLDH
BO34345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-PB | 304 | CG6378-PB | 1..304 | 1..304 | 1676 | 100 | Plus |
| BM-40-SPARC-PA | 304 | CG6378-PA | 1..304 | 1..304 | 1676 | 100 | Plus |
