Clone BO34347 Report

Search the DGRC for BO34347

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG12828-RA
Protein status:BO34347.pep: Imported from assembly
Sequenced Size:325

Clone Sequence Records

BO34347.complete Sequence

325 bp assembled on 2013-09-16

GenBank Submission: KX799515

> BO34347.complete
GAAGTTATCAGTCGACATGAAGAAGCATTTGGAAGTGTTCTTGGTCGTGG
CATTAGCTGCTCTAGCGGAATTGCCAGGAGTTACAGCCTCGTCCGTGGAA
ATACTGTCCCATTGTGTCGCCTGTCCGGACGAATTTAGGGGCATGTTGGT
CTGCGCCTTTATCAACGGTTGCTACTTGGAAATAGAATACTGCTCCATGG
TGGTCTTCAACTGTGGACGCCAACAGCACCACAAACACTTGTTCCTAGTG
GTAAACGAGGGCAAGTGCAAGCCAGTTCGGGGCTACAAATGCGAGACCAT
GGATTTTGCAAGCTTTCTAGACCAT

BO34347.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12828-RA 294 CG12828-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12828-RA 448 CG12828-RA 41..331 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7149415..7149637 239..17 1115 100 Minus
2R 25286936 2R 7149291..7149358 307..240 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:51:21 has no hits.

BO34347.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:37 Download gff for BO34347.complete
Subject Subject Range Query Range Percent Splice Strand
CG12828-RA 41..331 17..309 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:16 Download gff for BO34347.complete
Subject Subject Range Query Range Percent Splice Strand
CG12828-RA 41..331 17..309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:16 Download gff for BO34347.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7149289..7149358 240..309 97 <- Minus
2R 7149415..7149637 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:37 Download gff for BO34347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3036794..3036863 240..309 97 <- Minus
arm_2R 3036920..3037142 17..239 100   Minus

BO34347.pep Sequence

Translation from 16 to 325

> BO34347.pep
MKKHLEVFLVVALAALAELPGVTASSVEILSHCVACPDEFRGMLVCAFIN
GCYLEIEYCSMVVFNCGRQQHHKHLFLVVNEGKCKPVRGYKCETMDFASF
LDH

BO34347.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12828-PA 97 CG12828-PA 1..97 1..97 525 100 Plus