Clone BO34350 Report

Search the DGRC for BO34350

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG13358-RD
Protein status:BO34350.pep: Imported from assembly
Sequenced Size:937

Clone Sequence Records

BO34350.complete Sequence

937 bp assembled on 2013-09-16

GenBank Submission: KX793973

> BO34350.complete
GAAGTTATCAGTCGACATGGCCGGGTCAGTTCGTGCGACGCTCCTGGGTC
TCCTCATGCAGATCCTGTGCAATGGGCTGGCTGGTCAGCAGCTGCTCCTC
ACACGTCCCCAAAGGAGCCTGTTCGAGACTCCGCTGGGTCACGTAGAGCA
AGTGGAACAAGTGCCCTCTTTAGGCTGGAATAGTGTTGGTAGTGGACTCG
GAGTGGGCGAGTGGCCCTACAGCCCCGTTGGTCTCGGCCACATGAGCAAG
GATGAGCTGCTGACCCTGCTGGAGGCCTGGAAGGAGGTCGAGGAGGAATC
GGCCACAACAACGACTGCGTCGCCAGCGGATGCCAGCACACGTAGACCTC
CTCCGCCTCCACTGCCACCACCACCACCTCCTCCGCCACGACCCACACCC
ATACCAGTCTCCGTTGCAATCCCGTCACCGGCTGTTCCGCCCTCCGGCAC
TCCCATTACAGTGCGGCTCCCAGCCTTTGTGCCTGTGCGTCTGGCTGCCG
TGTTTACTCCGCTTGCCGGTGGACAAGCTGATAGTGCTGTTCCGTCTGCC
AACGGAGTCGGAGGGGCTGGAGGAGATGATTTGTCCACCGATGACGTGAC
AGATGATGACGGCGTCTCTACCCGGCTCTTTCGCTTTTTGCCCATGCCAG
GAGCTCGAACGAGACCGCAATCCAATTCACAGCCCAGGCAGCAATTTGTG
GTGAGGAACACCCTGGACAGCGTGGATGCGGGCACTGCCCCTGTCAGGCA
GCAGATTAAACCGGAAGTCCAGCCCAAGGCGACTGCTCCGCCTTCCATTC
CCAAGTTCCCTGGCCACCCAACTCCCTTCTTCCGTCCCAGATTTGGTGTG
CCACCGAGTCTGGCCAACGCTCGATTCGAGCTGGTGCCCTCTTCCCAAAT
CATCGGCGACTGGCGGGTGGCAAGCTTTCTAGACCAT

BO34350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13358-RD 906 CG13358-PD 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13358-RD 1427 CG13358-RB 24..927 16..919 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 804074..804898 840..16 4125 100 Minus
X 23542271 X 803924..804004 919..839 405 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:52:17 has no hits.

BO34350.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:59 Download gff for BO34350.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RD 25..927 17..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:36 Download gff for BO34350.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RD 25..927 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:36 Download gff for BO34350.complete
Subject Subject Range Query Range Percent Splice Strand
X 803921..804002 841..921 97 <- Minus
X 804074..804897 17..840 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:59 Download gff for BO34350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 697954..698035 841..921 97 <- Minus
arm_X 698107..698930 17..840 100   Minus

BO34350.pep Sequence

Translation from 16 to 937

> BO34350.pep
MAGSVRATLLGLLMQILCNGLAGQQLLLTRPQRSLFETPLGHVEQVEQVP
SLGWNSVGSGLGVGEWPYSPVGLGHMSKDELLTLLEAWKEVEEESATTTT
ASPADASTRRPPPPPLPPPPPPPPRPTPIPVSVAIPSPAVPPSGTPITVR
LPAFVPVRLAAVFTPLAGGQADSAVPSANGVGGAGGDDLSTDDVTDDDGV
STRLFRFLPMPGARTRPQSNSQPRQQFVVRNTLDSVDAGTAPVRQQIKPE
VQPKATAPPSIPKFPGHPTPFFRPRFGVPPSLANARFELVPSSQIIGDWR
VASFLDH

BO34350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13358-PD 301 CG13358-PB 1..301 1..301 1584 100 Plus
CG42449-PB 281 CG42449-PB 10..197 10..191 230 34.8 Plus
CG42449-PA 310 CG42449-PA 10..197 10..191 230 34.8 Plus