BO34359.complete Sequence
571 bp assembled on 2013-09-16
GenBank Submission: KX797419
> BO34359.complete
GAAGTTATCAGTCGACATGGCAACAAGCGCCAAACTGATGCTAGGCAGCG
GCCTCTGCCAAAAGCTAAGCCAGCTTACCAGGCAAATACACATGCAACCG
GCACTTATGTCCAGTTTTCGTTCATCCCGCGAAGTTCAGGAGCTGGACAA
GTATCCTGAAGTGGAGGTGGTGGCCAATCCGCCCGAGTGGCGTTTTGTGG
AGCGCTTGCTACCAGCGAAGACAGTACCACAGCCGGTGGAGAAGCCAAAA
TATCCATCCGGCTGGCAGCCACAAAAGGAGGATGGCTCAGAACTGGGTTA
CCATGTGGCCAGGACGAAGAATCACATGGTGCCCGTGTATCTGCACACCA
GGTTCCGTGGCCAGCGCCGGATCACGGTGGTGCGACGCGTCCAAGGAGAC
ATTTGGACGCTGGAAAAGGATCTGCGTGCGGTGGTGGAGCAGTCGCGAAA
CGGCAAGGTCTGCGCCACGAGAATCAATGAGCTGAGCGGTCAGATACACT
TCCATGGTGACCACGTGGACGTCCTGCGTGACTATCTCAAGGAGAAGGGC
TTCGCAAGCTTTCTAGACCAT
BO34359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL49-RB | 540 | CG4647-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
| mRpL49-RA | 540 | CG4647-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL49-RB | 774 | CG4647-RB | 82..620 | 15..553 | 2695 | 100 | Plus |
| mRpL49-RA | 674 | CG4647-RA | 82..620 | 15..553 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12907306..12907788 | 71..553 | 2415 | 100 | Plus |
| X | 23542271 | X | 12907186..12907244 | 15..73 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:52:05 has no hits.
BO34359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:50:55 Download gff for
BO34359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL49-RA | 84..620 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:31 Download gff for
BO34359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL49-RA | 84..620 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:31 Download gff for
BO34359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12907188..12907244 | 17..73 | 100 | -> | Plus |
| X | 12907309..12907788 | 74..555 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:50:55 Download gff for
BO34359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12801221..12801277 | 17..73 | 100 | -> | Plus |
| arm_X | 12801342..12801821 | 74..555 | 99 | | Plus |
BO34359.pep Sequence
Translation from 16 to 571
> BO34359.pep
MATSAKLMLGSGLCQKLSQLTRQIHMQPALMSSFRSSREVQELDKYPEVE
VVANPPEWRFVERLLPAKTVPQPVEKPKYPSGWQPQKEDGSELGYHVART
KNHMVPVYLHTRFRGQRRITVVRRVQGDIWTLEKDLRAVVEQSRNGKVCA
TRINELSGQIHFHGDHVDVLRDYLKEKGFASFLDH
BO34359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL49-PB | 179 | CG4647-PB | 1..179 | 1..179 | 943 | 100 | Plus |
| mRpL49-PA | 179 | CG4647-PA | 1..179 | 1..179 | 943 | 100 | Plus |
