BO34375.complete Sequence
385 bp assembled on 2013-09-16
GenBank Submission: KX794743
> BO34375.complete
GAAGTTATCAGTCGACATGAACGCACCACCTACCTTTGAGTCATTTCTGC
TCTATGAAGGCGAGAAAAAAATCATCAAGGAACTGGACACCAAAGTGACC
AATGCGGCTATATTCACCATAAACAAAGAGGATCACACGCTGGGCAACAT
GATCCGCAACCAACTGCTGAAGGATCCCAATGTTCTGTTTGCCGGCTACA
AGGTTCCGCATCCTCTGGAGCACAAGTTCGTCATCCGCATCCAGACTACG
GCCGATTATTCTCCGCAGGAAGCATTCATGAACGCCATAACCGATCTTCT
AGCAGAATTATCTCTCTTCGAAGAGCGTTTCAAAGACGCCATCAAGGAGA
AGAAGGAGGGCGGCGATGCAAGCTTTCTAGACCAT
BO34375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb11-RA | 354 | CG6840-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb11-RA | 516 | CG6840-RA | 103..453 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17409855..17410034 | 335..156 | 885 | 99.4 | Minus |
| 2L | 23513712 | 2L | 17410088..17410177 | 159..70 | 450 | 100 | Minus |
| 2L | 23513712 | 2L | 17410252..17410304 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:53:54 has no hits.
BO34375.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:51:29 Download gff for
BO34375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb11-RA | 103..453 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:06 Download gff for
BO34375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb11-RA | 103..453 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:06 Download gff for
BO34375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17409759..17409793 | 335..369 | 94 | <- | Minus |
| 2L | 17409856..17410030 | 160..334 | 100 | <- | Minus |
| 2L | 17410088..17410177 | 70..159 | 100 | <- | Minus |
| 2L | 17410252..17410304 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:51:29 Download gff for
BO34375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17409759..17409793 | 335..369 | 94 | <- | Minus |
| arm_2L | 17409856..17410030 | 160..334 | 100 | <- | Minus |
| arm_2L | 17410088..17410177 | 70..159 | 100 | <- | Minus |
| arm_2L | 17410252..17410304 | 17..69 | 100 | | Minus |
BO34375.pep Sequence
Translation from 16 to 385
> BO34375.pep
MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQL
LKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSL
FEERFKDAIKEKKEGGDASFLDH
BO34375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb11-PA | 117 | CG6840-PA | 1..117 | 1..117 | 602 | 100 | Plus |
