Clone BO34380 Report

Search the DGRC for BO34380

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptMpcp-RA
Protein status:BO34380.pep: Imported from assembly
Sequenced Size:1102

Clone Sequence Records

BO34380.complete Sequence

1102 bp assembled on 2013-09-16

GenBank Submission: KX795290

> BO34380.complete
GAAGTTATCAGTCGACATGTTCTCCAGCTTCTTTGAAACTGCCCGGAACT
CGCCATTCCGCACCCCCATGTCGATGGCAAGATGCGATGCCGCCGCCCCA
GTGGTGGAACCCCAGCCGGTTGAGGGTCGCCAGATCGCCGCCGCCGCTAC
CCCGGTGGCCAACCAGCAGGATTCGTGCGAATTCGGCAGCACCAAGTACT
TCGCTCTGTGCGGAATTGGTGGCATTCTCAGCTGCGGCACCACCCACACC
TTCGTGGTCCCACTGGATCTGGTGAAGTGCCGTCTGCAGGTCGACCAGGC
CAAGTACAAGAATCTGGTGCACGGATTCAAGGTCACCGTGGCGGAGGAGG
GCGCCCGCGGACTGGCTAAGGGCTGGTTCCCCACTCTGCTCGGCTACTCG
GCACAGGGTCTGTGCAAGTTCGGTCTGTACGAGTTGTTCAAGGTGAAGTA
CGCCGAAATCATTGGCGAGGAGAACGCCTACCTGTACCGCACCTCCTTGT
ATCTGGCTGCTTCCGCTTCGGCCGAGTTCTTCGCCGATATCGCTCTGGCG
CCGTTCGAGGCCGCCAAGGTGAAGATCCAGACTATTCCCGGATACGCCAA
CAACTTCCGCGAGGCAGTGCCCAAGATGCTAAAGGAGGAGGGCGTCAATG
CCTTCTACAAGGGTCTGGTTCCCCTGTGGATGCGACAGATCCCATACACC
ATGATGAAGTTCGCTTGCTTCGAGCGCACCGTGGAGCTGCTCTACAAGTA
TGTGGTGCCCAAGCCTCGTGCCGACTGCACCAAGGGCGAGCAGCTGATCG
TGACCTTCGCCGCTGGCTACATCGCCGGTGTGTTCTGTGCCGTGGTGTCG
CATCCCGCTGATGTGGTGGTGTCCAAGCTGAACCAGGCCAAGGGAGCTAG
CGCCATCAGCGTGGCCAAGTCGCTGGGCTTCAGTGGCATGTGGAACGGAT
TGACTCCTCGTATTATCATGATCGGTACCCTGACCGCTCTGCAGTGGTTC
ATCTACGATGGTGTGAAGGTCGCCCTGGGCATTCCCCGCCCACCACCACC
AGAGATGCCAGCTAGCCTGAAGGCCAAGCAGCATGCAAGCTTTCTAGACC
AT

BO34380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mpcp-RC 1071 CG4994-PC 1..1068 17..1084 5340 100 Plus
Mpcp-RB 1071 CG4994-PB 1..1068 17..1084 5340 100 Plus
Mpcp-RA 1071 CG4994-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mpcp-RC 1771 CG4994-RC 152..1219 17..1084 5340 100 Plus
Mpcp-RB 1757 CG4994-RB 138..1205 17..1084 5340 100 Plus
Mpcp-RA 1700 CG4994-RA 81..1148 17..1084 5340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14538032..14538422 17..407 1955 100 Plus
3L 28110227 3L 14538726..14539072 404..750 1735 100 Plus
3L 28110227 3L 14539553..14539889 748..1084 1685 100 Plus
2R 25286936 2R 20279409..20280160 927..176 1465 79.7 Minus
2R 25286936 2R 20279211..20279302 1059..968 205 81.5 Minus
Blast to na_te.dros performed on 2014-11-28 13:49:03 has no hits.

BO34380.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:51 Download gff for BO34380.complete
Subject Subject Range Query Range Percent Splice Strand
Mpcp-RA 86..1148 22..1086 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:38 Download gff for BO34380.complete
Subject Subject Range Query Range Percent Splice Strand
Mpcp-RA 86..1148 22..1086 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:38 Download gff for BO34380.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14538037..14538421 22..406 100 -> Plus
3L 14538729..14539069 407..747 100 -> Plus
3L 14539553..14539889 748..1086 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:51 Download gff for BO34380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14531137..14531521 22..406 100 -> Plus
arm_3L 14531829..14532169 407..747 100 -> Plus
arm_3L 14532653..14532989 748..1086 99   Plus

BO34380.pep Sequence

Translation from 16 to 1102

> BO34380.pep
MFSSFFETARNSPFRTPMSMARCDAAAPVVEPQPVEGRQIAAAATPVANQ
QDSCEFGSTKYFALCGIGGILSCGTTHTFVVPLDLVKCRLQVDQAKYKNL
VHGFKVTVAEEGARGLAKGWFPTLLGYSAQGLCKFGLYELFKVKYAEIIG
EENAYLYRTSLYLAASASAEFFADIALAPFEAAKVKIQTIPGYANNFREA
VPKMLKEEGVNAFYKGLVPLWMRQIPYTMMKFACFERTVELLYKYVVPKP
RADCTKGEQLIVTFAAGYIAGVFCAVVSHPADVVVSKLNQAKGASAISVA
KSLGFSGMWNGLTPRIIMIGTLTALQWFIYDGVKVALGIPRPPPPEMPAS
LKAKQHASFLDH

BO34380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mpcp-PC 356 CG4994-PC 1..356 1..356 1856 100 Plus
Mpcp-PB 356 CG4994-PB 1..356 1..356 1856 100 Plus
Mpcp-PA 356 CG4994-PA 1..356 1..356 1856 100 Plus
CG9090-PC 374 CG9090-PC 1..367 1..354 1379 71.1 Plus
CG9090-PB 374 CG9090-PB 1..367 1..354 1379 71.1 Plus