BO34389.complete Sequence
3163 bp assembled on 2013-11-09
GenBank Submission: KX795943
> BO34389.complete
GAAGTTATCAGTCGACATGAATAGCCTGGCGCGGGTTTTCAGCAACTTCC
GCGACTTCTACAACGACATCAATGCCGCCACCCTCACGGGAGCCATCGAT
GTGATCGTGGTGGAGCAGCGCGATGGCGAGTTCCAGTGCTCGCCCTTCCA
CGTCCGGTTCGGCAAACTGGGAGTGCTCAGGAGTCGGGAGAAGGTGGTGG
ACATTGAGATCAATGGCGTACCGGTCGACATACAGATGAAGCTGGGCGAT
TCTGGCGAGGCCTTCTTTGTGGAGGAGTGCCTGGAGGATGAGGACGAGGA
GCTGCCAGCCAACCTGGCCACCTCGCCCATACCCAACAGCTTCTTGGCGT
CTCGGGACAAGGCCAACGACACCATGGAGGACATCAGTGGAGTGGTGACA
GATAAGCACACCGACAACACACTCGAGCGTCGCAACCTAAGCGAAAAGCT
CAAGGAGTTCACCACGCAGAAGATCCGGCAGGAGTGGGCCGAGCACGAAG
AGCTGTTTCAGGGCGAGAAGAAGCCGGCGGACTCGGACTCGCTGGACAAC
CAAAGCAAAGCTTCAAACGAAGCTGAGACGGAGAAGGCAATTCCGGCGGT
CATTGAAGACACGGAAAAAGAAAAGGATCAGATCAAACCAGACGTTAACC
TCACCACGGTCACAACCAGCGAAGCCACCAAGGAGGTGTCCAAGAGCAAA
ACCAAGAAGCGGCGCAAGAAGTCGCAAATGAAGAAGAATGCCCAGCGCAA
GAACTCTTCAAGCAGCTCATTGGGCAGCGCCGGCGGCGGTGATTTGCCTT
CGGCGGAGACGCCATCACTGGGAGTGAGCAACATCGATGAAGGAGATGCC
CCCATATCCAGTGCCACAAACAACAACAACACCTCGTCGTCGAACGATGA
ACAGCTATCCGCTCCCCTGGTGACAGCTCGCACTGGGGACGATAGTCCGC
TCAGCGAGATTCCCCACACCCCCACTAGCAATCCACGTCTGGATTTGGAC
ATTCACTTCTTCAGCGACACGGAGATCACCACTCCCGTGGGTGGCGGTGG
TGCTGGGTCAGGTCGTGCCGCCGGCGGACGACCTTCGACTCCCATCCAAA
GTGACAGTGAACTGGAAACCACCATGCGAGACAACCGTCACGTGGTGACT
GAAGAAAGCACCGCATCGTGGAAGTGGGGCGAGTTGCCCACACCGGAGCA
GGCCAAGAATGAGGCCATGAGCGCCGCCCAGGTGCAGCAAAGCGAGCACC
AATCGATGCTCAGCAACATGTTCAGCTTCATGAAGAGGGCAAATCGGCTA
CGCAAAGAGAAGGGCGTCGGCGAAGTGGGTGACATCTACCTGTCTGATCT
GGATGCCGGCAGCATGGACCCCGAGATGGCGGCCCTCTACTTCCCTAGTC
CCCTGTCCAAGGCGGCATCACCGCCGGAGGAGGATGGCGAAAGCGGCAAT
GGCACCAGTCTGCCTCACTCGCCCAGCTCGCTGGAGGAAGGTCAGAAGAG
TATTGACTCGGACTTTGACGAGACCAAGCAGCAGAGGGACAACAACAGGT
ACTTGGACTTTGTGGCCATGTCCATGTGCGGAATGTCGGAGCAGGGAGCA
CCACCCTCGGACGAGGAGTTCGACCGCCACCTGGTCAACTATCCAGACGT
GTGCAAAAGCCCCAGCATTTTTTCATCGCCTAACCTAGTCGTACGGCTGA
ATGGCAAATACTACACCTGGATGGCTGCATGTCCCATTGTCATGACAATG
ATCACCTTCCAGAAGCCACTAACCCATGATGCCATTGAGCAGCTGATGTC
TCAGACAGTCGACGGCAAGTGTCTGCCTGGCGACGAGAAGCAGGAGGCAG
TTGCCCAGGCCGACAATGGGGGTCAGACGAAGCGCTACTGGTGGAGCTGG
CGACGCTCGCAGGACGCTGCGCCCAACCACTTGAACAACACTCATGGTAT
GCCTTTGGGCAAGGATGAGAAAGATGGTGATCAGGCAGCTGTGGCAACGC
AAACTTCGCGGCCTACCTCGCCCGACATCACCGATCCCACGCTGAGCAAG
AGCGACTCCCTGGTGAACGCGGAGAACACCTCGGCGTTGGTGGACAACCT
GGAGGAGCTAACCATGGCCTCCAACAAGAGCGACGAGCCCAAAGAGCGTT
ACAAGAAGTCGCTGCGACTTAGCTCGGCGGCTATCAAAAAACTGAACCTC
AAGGAGGGCATGAATGAAATCGAGTTCAGCGTAACGACCGCTTATCAAGG
GACGACGCGCTGCAAGTGCTACTTGTTCCGCTGGAAGCACAACGACAAGG
TGGTGATCTCGGACATTGACGGCACCATCACCAAGTCGGACGTGCTGGGC
CACATTTTACCCATGGTGGGCAAGGATTGGGCGCAACTCGGTGTGGCGCA
GCTCTTCTCGAAGATCGAGCAAAACGGCTACAAGCTGCTCTATCTGTCAG
CCCGTGCCATCGGCCAAAGCAGGGTGACACGCGAGTACCTCCGGTCGATC
CGGCAGGGCAACGTGATGCTGCCGGACGGACCGCTGTTGCTGAATCCCAC
GTCCCTGATATCGGCCTTCCACCGCGAGGTGATTGAGAAGAAGCCGGAGC
AGTTTAAGATCGCCTGTCTGTCGGACATCCGCGATCTGTTTCCCGACAAG
GAGCCCTTCTACGCCGGCTACGGCAACCGCATCAATGACGTGTGGGCATA
CCGAGCAGTGGGCATTCCCATCATGCGCATCTTTACGATCAACACCAAGG
GCGAGTTGAAGCACGAGCTGACCCAAACATTCCAGTCCTCTGGCTACATC
AATCAGTCGCTAGAAGTCGACGAATACTTTCCCCTGCTAACCAACCAAGA
TGAATTCGATTACCGGACGGACATCTTCGACGACGAGGAGTCCGAGGAGG
AGCTTCAGTTCAGCGACGACTACGACGTGGACGTCGAGCACGGTTCGAGT
GAGGAAAGCAGTGGGGATGAGGACGATGACGAAGCCCTCTATAACGATGA
TTTTGCCAACGATGACAATGGCATCCAGGCAGTCGTGGCCTCCGGCGACG
AACGGACCGCCGATGTGGGCCTCATAATGCGAGTCCGCCGCGTCTCCACC
AAAAACGAAGTCATTATGGCTTCGCCTCCCAAGTGGATTAATTCCGCAAG
CTTTCTAGACCAT
BO34389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpin-RH | 3132 | CG8709-PH | 1..3129 | 17..3145 | 15630 | 100 | Plus |
| Lpin-RM | 3270 | CG8709-PM | 528..3267 | 406..3145 | 13685 | 100 | Plus |
| Lpin-RA | 3270 | CG8709-PA | 528..3267 | 406..3145 | 13685 | 100 | Plus |
| Lpin-RM | 3270 | CG8709-PM | 1..389 | 17..405 | 1945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpin-RH | 3858 | CG8709-RH | 480..3608 | 17..3145 | 15630 | 100 | Plus |
| Lpin-RM | 4369 | CG8709-RM | 1380..4119 | 406..3145 | 13685 | 100 | Plus |
| Lpin-RA | 3996 | CG8709-RA | 1007..3746 | 406..3145 | 13685 | 100 | Plus |
| Lpin-RM | 4369 | CG8709-RM | 853..1241 | 17..405 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8140681..8141820 | 1545..406 | 5685 | 99.9 | Minus |
| 2R | 25286936 | 2R | 8139121..8139622 | 2687..2186 | 2510 | 100 | Minus |
| 2R | 25286936 | 2R | 8138238..8138592 | 3145..2791 | 1775 | 100 | Minus |
| 2R | 25286936 | 2R | 8139679..8139892 | 2185..1972 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 8142098..8142308 | 406..196 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 8139954..8140149 | 1973..1778 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 8142641..8142822 | 198..17 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8140242..8140371 | 1778..1649 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 8140511..8140616 | 1651..1546 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 8138938..8139041 | 2790..2687 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:33:00 has no hits.
BO34389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:10 Download gff for
BO34389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RH | 480..3608 | 17..3147 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:46 Download gff for
BO34389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RH | 480..3608 | 17..3147 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:46 Download gff for
BO34389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8140243..8140371 | 1649..1777 | 100 | <- | Minus |
| 2R | 8140514..8140616 | 1546..1648 | 100 | <- | Minus |
| 2R | 8138236..8138592 | 2791..3147 | 99 | <- | Minus |
| 2R | 8138938..8139041 | 2687..2790 | 100 | <- | Minus |
| 2R | 8139122..8139622 | 2186..2686 | 100 | <- | Minus |
| 2R | 8139679..8139890 | 1974..2185 | 100 | <- | Minus |
| 2R | 8139954..8140149 | 1778..1973 | 100 | <- | Minus |
| 2R | 8140681..8141820 | 406..1545 | 99 | <- | Minus |
| 2R | 8142099..8142307 | 197..405 | 100 | <- | Minus |
| 2R | 8142643..8142822 | 17..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:10 Download gff for
BO34389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4025741..4026097 | 2791..3147 | 99 | <- | Minus |
| arm_2R | 4026443..4026546 | 2687..2790 | 100 | <- | Minus |
| arm_2R | 4026627..4027127 | 2186..2686 | 100 | <- | Minus |
| arm_2R | 4027184..4027395 | 1974..2185 | 100 | <- | Minus |
| arm_2R | 4027459..4027654 | 1778..1973 | 100 | <- | Minus |
| arm_2R | 4027748..4027876 | 1649..1777 | 100 | <- | Minus |
| arm_2R | 4028019..4028121 | 1546..1648 | 100 | <- | Minus |
| arm_2R | 4028186..4029325 | 406..1545 | 99 | <- | Minus |
| arm_2R | 4029604..4029812 | 197..405 | 100 | <- | Minus |
| arm_2R | 4030148..4030327 | 17..196 | 100 | | Minus |
BO34389.pep Sequence
Translation from 16 to 3163
> BO34389.pep
MNSLARVFSNFRDFYNDINAATLTGAIDVIVVEQRDGEFQCSPFHVRFGK
LGVLRSREKVVDIEINGVPVDIQMKLGDSGEAFFVEECLEDEDEELPANL
ATSPIPNSFLASRDKANDTMEDISGVVTDKHTDNTLERRNLSEKLKEFTT
QKIRQEWAEHEELFQGEKKPADSDSLDNQSKASNEAETEKAIPAVIEDTE
KEKDQIKPDVNLTTVTTSEATKEVSKSKTKKRRKKSQMKKNAQRKNSSSS
SLGSAGGGDLPSAETPSLGVSNIDEGDAPISSATNNNNTSSSNDEQLSAP
LVTARTGDDSPLSEIPHTPTSNPRLDLDIHFFSDTEITTPVGGGGAGSGR
AAGGRPSTPIQSDSELETTMRDNRHVVTEESTASWKWGELPTPEQAKNEA
MSAAQVQQSEHQSMLSNMFSFMKRANRLRKEKGVGEVGDIYLSDLDAGSM
DPEMAALYFPSPLSKAASPPEEDGESGNGTSLPHSPSSLEEGQKSIDSDF
DETKQQRDNNRYLDFVAMSMCGMSEQGAPPSDEEFDRHLVNYPDVCKSPS
IFSSPNLVVRLNGKYYTWMAACPIVMTMITFQKPLTHDAIEQLMSQTVDG
KCLPGDEKQEAVAQADNGGQTKRYWWSWRRSQDAAPNHLNNTHGMPLGKD
EKDGDQAAVATQTSRPTSPDITDPTLSKSDSLVNAENTSALVDNLEELTM
ASNKSDEPKERYKKSLRLSSAAIKKLNLKEGMNEIEFSVTTAYQGTTRCK
CYLFRWKHNDKVVISDIDGTITKSDVLGHILPMVGKDWAQLGVAQLFSKI
EQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLLLNPTSLISA
FHREVIEKKPEQFKIACLSDIRDLFPDKEPFYAGYGNRINDVWAYRAVGI
PIMRIFTINTKGELKHELTQTFQSSGYINQSLEVDEYFPLLTNQDEFDYR
TDIFDDEESEEELQFSDDYDVDVEHGSSEESSGDEDDDEALYNDDFANDD
NGIQAVVASGDERTADVGLIMRVRRVSTKNEVIMASPPKWINSASFLDH
BO34389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpin-PH | 1043 | CG8709-PH | 1..1043 | 1..1043 | 5404 | 100 | Plus |
| Lpin-PM | 1089 | CG8709-PM | 1..1089 | 1..1043 | 5347 | 95.8 | Plus |
| Lpin-PA | 1089 | CG8709-PA | 1..1089 | 1..1043 | 5347 | 95.8 | Plus |
| Lpin-PD | 1088 | CG8709-PD | 1..1088 | 1..1043 | 5326 | 95.6 | Plus |
| Lpin-PE | 1045 | CG8709-PE | 1..1045 | 1..1043 | 5039 | 91.6 | Plus |
