Clone BO34392 Report

Search the DGRC for BO34392

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-SD-RA
Protein status:BO34392.pep: Imported from assembly
Sequenced Size:592

Clone Sequence Records

BO34392.complete Sequence

592 bp assembled on 2013-09-16

GenBank Submission: KX794869

> BO34392.complete
GAAGTTATCAGTCGACATGACTTGGATCGGTTTGCTCATCGTTGGCCTCA
CAGCAATCGCTGTCCAGGGGGAAGTACCGATCGTGACGAGGGCCGAGTGG
AATGCCAAACCGCCGAACGGAGCCATAGACAGCATGGAAACTCCCTTGCC
ACGTGCTGTGATCGCCCATACAGCTGGAGGAGCTTGTGCGGATGATGTTA
CATGCTCCCAGCACATGCAAAATCTGCAAAACTTCCAGATGTCCAAGCAA
AAGTTCTCGGACATTGGCTACCACTATCTGATCGGCGGTAATGGCAAGGT
ATACGAAGGCAGAAGTCCAAGCCAGAGAGGAGCCTTTGCCGGTCCCAATA
ACGATGGTTCCCTGGGCATTGCGTTTATTGGTAACTTCGAAGAACGGGCG
CCCAACAAGGAGGCCTTGGATGCCGCCAAGGAGCTGCTGGAGCAGGCTGT
CAAACAGGCTCAGCTGGTGGAGGGCTATAAGTTACTGGGCCATCGTCAAG
TCAGTGCTACCAAGAGTCCTGGAGAAGCACTCTACGCTCTGATACAGCAG
TGGCCCAACTGGTCCGAAGAAATGGCAAGCTTTCTAGACCAT

BO34392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SD-RA 561 CG7496-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SD-RA 721 CG7496-RA 26..583 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7651205..7651762 17..574 2790 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:49:20 has no hits.

BO34392.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:59 Download gff for BO34392.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SD-RA 26..583 17..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:43 Download gff for BO34392.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SD-RA 26..583 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:43 Download gff for BO34392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7651205..7651762 17..576 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:59 Download gff for BO34392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7644305..7644862 17..576 99   Plus

BO34392.pep Sequence

Translation from 16 to 592

> BO34392.pep
MTWIGLLIVGLTAIAVQGEVPIVTRAEWNAKPPNGAIDSMETPLPRAVIA
HTAGGACADDVTCSQHMQNLQNFQMSKQKFSDIGYHYLIGGNGKVYEGRS
PSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQAVKQAQL
VEGYKLLGHRQVSATKSPGEALYALIQQWPNWSEEMASFLDH

BO34392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SD-PA 186 CG7496-PA 1..186 1..186 976 100 Plus
PGRP-LC-PE 329 CG4432-PE 165..329 22..186 392 43.6 Plus
PGRP-LC-PD 500 CG4432-PD 336..500 22..186 392 43.6 Plus
PGRP-LC-PA 500 CG4432-PA 336..500 22..186 392 43.6 Plus
PGRP-SC2-PA 184 CG14745-PA 8..182 6..182 340 41.8 Plus