BO34392.complete Sequence
592 bp assembled on 2013-09-16
GenBank Submission: KX794869
> BO34392.complete
GAAGTTATCAGTCGACATGACTTGGATCGGTTTGCTCATCGTTGGCCTCA
CAGCAATCGCTGTCCAGGGGGAAGTACCGATCGTGACGAGGGCCGAGTGG
AATGCCAAACCGCCGAACGGAGCCATAGACAGCATGGAAACTCCCTTGCC
ACGTGCTGTGATCGCCCATACAGCTGGAGGAGCTTGTGCGGATGATGTTA
CATGCTCCCAGCACATGCAAAATCTGCAAAACTTCCAGATGTCCAAGCAA
AAGTTCTCGGACATTGGCTACCACTATCTGATCGGCGGTAATGGCAAGGT
ATACGAAGGCAGAAGTCCAAGCCAGAGAGGAGCCTTTGCCGGTCCCAATA
ACGATGGTTCCCTGGGCATTGCGTTTATTGGTAACTTCGAAGAACGGGCG
CCCAACAAGGAGGCCTTGGATGCCGCCAAGGAGCTGCTGGAGCAGGCTGT
CAAACAGGCTCAGCTGGTGGAGGGCTATAAGTTACTGGGCCATCGTCAAG
TCAGTGCTACCAAGAGTCCTGGAGAAGCACTCTACGCTCTGATACAGCAG
TGGCCCAACTGGTCCGAAGAAATGGCAAGCTTTCTAGACCAT
BO34392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SD-RA | 561 | CG7496-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SD-RA | 721 | CG7496-RA | 26..583 | 17..574 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7651205..7651762 | 17..574 | 2790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:49:20 has no hits.
BO34392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:59 Download gff for
BO34392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SD-RA | 26..583 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:43 Download gff for
BO34392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SD-RA | 26..583 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:43 Download gff for
BO34392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7651205..7651762 | 17..576 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:59 Download gff for
BO34392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7644305..7644862 | 17..576 | 99 | | Plus |
BO34392.pep Sequence
Translation from 16 to 592
> BO34392.pep
MTWIGLLIVGLTAIAVQGEVPIVTRAEWNAKPPNGAIDSMETPLPRAVIA
HTAGGACADDVTCSQHMQNLQNFQMSKQKFSDIGYHYLIGGNGKVYEGRS
PSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQAVKQAQL
VEGYKLLGHRQVSATKSPGEALYALIQQWPNWSEEMASFLDH
BO34392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SD-PA | 186 | CG7496-PA | 1..186 | 1..186 | 976 | 100 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 165..329 | 22..186 | 392 | 43.6 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 336..500 | 22..186 | 392 | 43.6 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 336..500 | 22..186 | 392 | 43.6 | Plus |
PGRP-SC2-PA | 184 | CG14745-PA | 8..182 | 6..182 | 340 | 41.8 | Plus |