Clone BO34396 Report

Search the DGRC for BO34396

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:343
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG4398-RA
Protein status:BO34396.pep: Imported from assembly
Sequenced Size:733

Clone Sequence Records

BO34396.complete Sequence

733 bp assembled on 2013-09-16

GenBank Submission: KX794294

> BO34396.complete
GAAGTTATCAGTCGACATGAGTATTTTGAGACTGGTGCTGCAATTCCTGC
TCTTCAGTTTGGTGCTGGTTTCGGGAAAGTTTCTCTATCACCGGAGCTAC
AAATACTCCCCGGAGCTGATAGCCGAACTGAAAGACTTTGAGAAGCTGAT
TCCCACGGTTACCATCGACGAAGTAGTCGCCGAGCATATGATTACGGATT
CCGGATTCCGTAAGGCCATTAAGTTTTTGCGCAGCTCCGATTTCAAGACG
CTGCAGCAGCGCATTGAGTCTCTGCCAGAAGTTGTGGATCTAATTAATTT
CGTGCACCTCAATGATACGACCCAAGAAACAGTGGAGAAGTATTGGTATC
GTAATAACACATATAACAGGCTTCGCAGGTCGGCTTATCTTAGGGAGCAG
ATTGTTTTGGTGCTACTCGAATCGAGTTCAGAGTTCACACAGTTGAGTTC
GTTCACCAGTTTCGTGCGTGAAATACTAACGCATTTGCCCCGTGATCGAT
TTGTGGCCCTGATCAATGAAAAGCGGCAGAAGAGTGCCTTGTTCGCCAAG
TTCTATCAGGCACTGAAAAGTGCAGAGTTCAAGGCGAAATCCGAAGCGGC
ATGGAAAACCAGCAATGTACAGAGCGTTGTTCAAGAACTTTCGCGACACG
CAATCGATGCCCAGGATCTGAAAACCATAGGTTACGAAGTCATCTCTTGG
GGTCCGAACACATTGGCAAGCTTTCTAGACCAT

BO34396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4398-RA 702 CG4398-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4398-RA 822 CG4398-RA 70..768 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16432313..16432900 17..604 2940 100 Plus
2R 25286936 2R 16433018..16433129 604..715 560 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:49:08 has no hits.

BO34396.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:54 Download gff for BO34396.complete
Subject Subject Range Query Range Percent Splice Strand
CG4398-RA 70..768 17..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:40 Download gff for BO34396.complete
Subject Subject Range Query Range Percent Splice Strand
CG4398-RA 70..768 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:40 Download gff for BO34396.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16432313..16432900 17..604 100 -> Plus
2R 16433019..16433129 605..717 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:54 Download gff for BO34396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12320524..12320634 605..717 98   Plus
arm_2R 12319818..12320405 17..604 100 -> Plus

BO34396.pep Sequence

Translation from 16 to 733

> BO34396.pep
MSILRLVLQFLLFSLVLVSGKFLYHRSYKYSPELIAELKDFEKLIPTVTI
DEVVAEHMITDSGFRKAIKFLRSSDFKTLQQRIESLPEVVDLINFVHLND
TTQETVEKYWYRNNTYNRLRRSAYLREQIVLVLLESSSEFTQLSSFTSFV
REILTHLPRDRFVALINEKRQKSALFAKFYQALKSAEFKAKSEAAWKTSN
VQSVVQELSRHAIDAQDLKTIGYEVISWGPNTLASFLDH

BO34396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4398-PA 233 CG4398-PA 1..233 1..233 1163 100 Plus
CG15712-PA 214 CG15712-PA 29..213 37..232 250 32.1 Plus