BO34396.complete Sequence
733 bp assembled on 2013-09-16
GenBank Submission: KX794294
> BO34396.complete
GAAGTTATCAGTCGACATGAGTATTTTGAGACTGGTGCTGCAATTCCTGC
TCTTCAGTTTGGTGCTGGTTTCGGGAAAGTTTCTCTATCACCGGAGCTAC
AAATACTCCCCGGAGCTGATAGCCGAACTGAAAGACTTTGAGAAGCTGAT
TCCCACGGTTACCATCGACGAAGTAGTCGCCGAGCATATGATTACGGATT
CCGGATTCCGTAAGGCCATTAAGTTTTTGCGCAGCTCCGATTTCAAGACG
CTGCAGCAGCGCATTGAGTCTCTGCCAGAAGTTGTGGATCTAATTAATTT
CGTGCACCTCAATGATACGACCCAAGAAACAGTGGAGAAGTATTGGTATC
GTAATAACACATATAACAGGCTTCGCAGGTCGGCTTATCTTAGGGAGCAG
ATTGTTTTGGTGCTACTCGAATCGAGTTCAGAGTTCACACAGTTGAGTTC
GTTCACCAGTTTCGTGCGTGAAATACTAACGCATTTGCCCCGTGATCGAT
TTGTGGCCCTGATCAATGAAAAGCGGCAGAAGAGTGCCTTGTTCGCCAAG
TTCTATCAGGCACTGAAAAGTGCAGAGTTCAAGGCGAAATCCGAAGCGGC
ATGGAAAACCAGCAATGTACAGAGCGTTGTTCAAGAACTTTCGCGACACG
CAATCGATGCCCAGGATCTGAAAACCATAGGTTACGAAGTCATCTCTTGG
GGTCCGAACACATTGGCAAGCTTTCTAGACCAT
BO34396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4398-RA | 702 | CG4398-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4398-RA | 822 | CG4398-RA | 70..768 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16432313..16432900 | 17..604 | 2940 | 100 | Plus |
2R | 25286936 | 2R | 16433018..16433129 | 604..715 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:49:08 has no hits.
BO34396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:54 Download gff for
BO34396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4398-RA | 70..768 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:40 Download gff for
BO34396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4398-RA | 70..768 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:40 Download gff for
BO34396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16432313..16432900 | 17..604 | 100 | -> | Plus |
2R | 16433019..16433129 | 605..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:54 Download gff for
BO34396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12320524..12320634 | 605..717 | 98 | | Plus |
arm_2R | 12319818..12320405 | 17..604 | 100 | -> | Plus |
BO34396.pep Sequence
Translation from 16 to 733
> BO34396.pep
MSILRLVLQFLLFSLVLVSGKFLYHRSYKYSPELIAELKDFEKLIPTVTI
DEVVAEHMITDSGFRKAIKFLRSSDFKTLQQRIESLPEVVDLINFVHLND
TTQETVEKYWYRNNTYNRLRRSAYLREQIVLVLLESSSEFTQLSSFTSFV
REILTHLPRDRFVALINEKRQKSALFAKFYQALKSAEFKAKSEAAWKTSN
VQSVVQELSRHAIDAQDLKTIGYEVISWGPNTLASFLDH
BO34396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4398-PA | 233 | CG4398-PA | 1..233 | 1..233 | 1163 | 100 | Plus |
CG15712-PA | 214 | CG15712-PA | 29..213 | 37..232 | 250 | 32.1 | Plus |