BO34415.complete Sequence
1096 bp assembled on 2013-09-16
GenBank Submission: KX799559
> BO34415.complete
GAAGTTATCAGTCGACATGCCAGCACGACGAAGTGAAAGGATTGCGGCAC
GTGGGGATGCTAATGGTAGCCCAACAAACGAGTCCAACACGGGACCTGTG
GGAAGAGTTCGCCGTGGTACGAACTCAAGGGACCAGTCCGATAGACCACG
TGGTGGCCGTGCAGCCCCCAGGGGCAGGCGAACTATTGTTCGTCCTGAAA
TTCGTTTTTCGACACCGACAATGGACGAAAGACAACGTGCGAGAATCGAG
GCTATGGCTGCGATAGCTGCTGGTACAGATTCTGAGGATACTGAAGGATC
TGCCGAAGAAGTCCGCTCTCAATCATTCTTTGCTGTTTCTGTTTTTTTGA
CTGCCCGACTGGGAACTCCTGGTCGTCGAGCAACTAGTACACCAGCCGCT
GTCCCGTCACGTCGTGGCCGCAGGACGGTTTCAATTTCAGTAGCTACACC
TTCGAATCCGCCTGTTCGGGCCACTGTAATACGCCAAGGTTCACAGATGC
ACCTAACCAGAGGTCTACCAACTGTGACTGAAAATGTGCCAATGGACGAA
ACTTTTGACACTGAGTCGTTGCAAAGCAACTCTCTGGTGCTAAGACTTTT
TCGCATCGAATCCGGAATACCCACCCAAGGTGATCCCCTCACCATCACTA
GGCTCCGTCGAGAGATCTCAGAGTTCTCAACCGATCAAACGGAAGGGTGT
AAGGCGGAGATGGTGGGCGACAATCTGTTCCACTGGGTAGCCACGATCCC
AGGTCCCTCGGAAACAGTTTACGAAGGTGGGCGTTTTAGAGTGGAGATAG
TCTTTCCCAGGAACTATCCATTTTATCCCCCCTATCTTGCGTTTTTAACC
AAGACTTACCACTGCAACATCGCTTTATCTGGGCGCATTTGCCTGGATAT
TCTCGGCTCGAAGTGGTCGCCAGCTTTGTCGGTTTCCAAGGTACTTATAT
CCATAATGTCATTGCTGGCAGACCCGAATCCACACGATCCTATGGAGGTA
TCCGTAGCAGATGTTTTCAAGGGAAACCGTGCCCTCCACGACAAGAATGC
ACGCGAATGGACCAAAAAATATGCCAAGGCAAGCTTTCTAGACCAT
BO34415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10862-RA | 1065 | CG10862-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10862-RA | 1201 | CG10862-RA | 77..1138 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3653468..3654329 | 1078..217 | 4310 | 100 | Minus |
| 3L | 28110227 | 3L | 3654436..3654636 | 217..17 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:54:27 has no hits.
BO34415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:51:40 Download gff for
BO34415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10862-RA | 77..1138 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:16 Download gff for
BO34415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10862-RA | 77..1138 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:16 Download gff for
BO34415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3654436..3654636 | 17..217 | 100 | | Minus |
| 3L | 3653465..3654328 | 218..1080 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:51:40 Download gff for
BO34415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3653465..3654328 | 218..1080 | 99 | <- | Minus |
| arm_3L | 3654436..3654636 | 17..217 | 100 | | Minus |
BO34415.pep Sequence
Translation from 16 to 1096
> BO34415.pep
MPARRSERIAARGDANGSPTNESNTGPVGRVRRGTNSRDQSDRPRGGRAA
PRGRRTIVRPEIRFSTPTMDERQRARIEAMAAIAAGTDSEDTEGSAEEVR
SQSFFAVSVFLTARLGTPGRRATSTPAAVPSRRGRRTVSISVATPSNPPV
RATVIRQGSQMHLTRGLPTVTENVPMDETFDTESLQSNSLVLRLFRIESG
IPTQGDPLTITRLRREISEFSTDQTEGCKAEMVGDNLFHWVATIPGPSET
VYEGGRFRVEIVFPRNYPFYPPYLAFLTKTYHCNIALSGRICLDILGSKW
SPALSVSKVLISIMSLLADPNPHDPMEVSVADVFKGNRALHDKNAREWTK
KYAKASFLDH
BO34415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10862-PA | 354 | CG10862-PA | 1..354 | 1..354 | 1823 | 100 | Plus |
| eff-PC | 147 | CG7425-PC | 1..146 | 208..353 | 411 | 51.4 | Plus |
| eff-PB | 147 | CG7425-PB | 1..146 | 208..353 | 411 | 51.4 | Plus |
| eff-PA | 147 | CG7425-PA | 1..146 | 208..353 | 411 | 51.4 | Plus |
| CG5440-PC | 169 | CG5440-PC | 4..167 | 194..354 | 411 | 48.2 | Plus |
