BO34425.complete Sequence
1516 bp assembled on 2013-09-16
GenBank Submission: KX795988
> BO34425.complete
GAAGTTATCAGTCGACATGCTGCACTTAAGGCTATTCGATAGCTCACTCT
ACTACACCCTGGCCTCCGCCTCCGAATCCTCGGGGCTGGCGTCCTCCACC
TCCACGGAAAGGTCGTTCAATGGCACCCAGGGGGCGGGGGGCGTGGCCGC
TGGCGGCGAGTCCCTAACGCCAACCGACGTGGCTGCAGTTAATCTGACAT
ATTTCACACCTGCGATATCACACGTGATGCTGGCGCCAACAACGATAGCA
ACCACGACAGCCTCGGCCACAATGGTCCAGATCCAGACGACAGCGGCGCC
AAGTCACGACTTGGAGACGGGCGGCAACTCCACATCCAGCGACCCCGGCG
AATTTGACAATTTAAATTCGTTCTACTTTTATGAGACCGAACAGTTTGCT
GTGCTCTGGATCCTGTTCACCGTCATCGTTCTGGGCAATTCAGCTGTTCT
GTTCGTGATGTTCATCAACAAGAATCGCAAGTCGCGGATGAACTACTTCA
TTAAACAGCTGGCATTGGCAGATCTGTGCGTGGGACTGCTCAACGTCCTC
ACCGACATCATATGGCGCATCACGATTTCGTGGCGGGCAGGCAACCTGGC
CTGCAAGGCCATCCGCTTCTCGCAGGTCTGCGTCACATACTCGTCCACCT
ACGTGCTGGTGGCCATGAGCATCGACAGATACGATGCCATCACACACCCC
ATGAACTTCTCAAAGTCGTGGAAAAGAGCCCGTCACCTGGTGGCTGGCGC
ATGGCTCATCTCGGCGTTGTTTTCGCTTCCCATCCTGGTTTTGTACGAGG
AGAAGCTCATCCAAGGACATCCGCAATGCTGGATTGAGTTGGGTTCACCG
ATCGCCTGGCAGGTGTACATGAGCCTGGTGTCGGCCACTCTATTTGCCAT
TCCTGCGCTGATCATATCTGCCTGCTATGCGATCATCGTAAAGACGATTT
GGGCAAAGGGTTCCATTTTTGTACCCACGGAACGTGCTGGTTTTGGAGCT
GCACCTGCCAGGAGGGCCAGCTCGAGGGGCATTATTCCACGGGCAAAGGT
CAAAACGGTCAAGATGACATTGACCATCGTGTTTGTGTTCATCATCTGCT
GGTCGCCGTATATCATCTTCGATCTGCTGCAGGTCTTTGGCCAGATTCCA
CACTCACAGACCAACATTGCCATCGCCACCTTCATCCAAAGTCTGGCACC
GCTGAACTCGGCGGCGAATCCACTAATCTATTGCCTCTTCTCATCGCAGG
TCTTTCGCACATTAAGTCGCTTTCCGCCTTTTAAGTGGTTCACATGCTGC
TGCAAGTCATACCGCAACAACTCGCAGCAAAACCGCTGCCACACGGTTGG
TCGTCGGCTTCACAACAGTTGCGATTCGATGAGGACACTGACCACTTCGT
TGACGGTTTCCCGAAGGTCCACCAACAAGACGAACGCCCGTGTGGTAATC
TGCGAACGTCCCACCAAGGTGGTTACCGTGCCAGCCATGTCGGAGGTAGC
AAGCTTTCTAGACCAT
BO34425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCAP-R-RC | 1485 | CG33344-PC | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCAP-R-RC | 2986 | CG33344-RC | 641..2123 | 16..1498 | 7415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25941257..25941626 | 385..16 | 1850 | 100 | Minus |
| 3R | 32079331 | 3R | 25924685..25924971 | 1266..980 | 1435 | 100 | Minus |
| 3R | 32079331 | 3R | 25925055..25925315 | 980..720 | 1305 | 100 | Minus |
| 3R | 32079331 | 3R | 25924362..25924595 | 1498..1265 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 25925506..25925707 | 720..519 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 25925768..25925905 | 521..384 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:54:06 has no hits.
BO34425.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:51:33 Download gff for
BO34425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CcapR-RC | 642..2123 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:08 Download gff for
BO34425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCAP-R-RC | 642..2123 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:08 Download gff for
BO34425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25925768..25925903 | 386..521 | 100 | <- | Minus |
| 3R | 25925055..25925315 | 720..980 | 100 | <- | Minus |
| 3R | 25925507..25925704 | 522..719 | 100 | <- | Minus |
| 3R | 25924359..25924593 | 1267..1500 | 99 | <- | Minus |
| 3R | 25924685..25924970 | 981..1266 | 100 | <- | Minus |
| 3R | 25941257..25941625 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:51:33 Download gff for
BO34425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21750081..21750315 | 1267..1500 | 99 | <- | Minus |
| arm_3R | 21750407..21750692 | 981..1266 | 100 | <- | Minus |
| arm_3R | 21750777..21751037 | 720..980 | 100 | <- | Minus |
| arm_3R | 21751229..21751426 | 522..719 | 100 | <- | Minus |
| arm_3R | 21751490..21751625 | 386..521 | 100 | <- | Minus |
| arm_3R | 21766979..21767347 | 17..385 | 100 | | Minus |
BO34425.pep Sequence
Translation from 16 to 1516
> BO34425.pep
MLHLRLFDSSLYYTLASASESSGLASSTSTERSFNGTQGAGGVAAGGESL
TPTDVAAVNLTYFTPAISHVMLAPTTIATTTASATMVQIQTTAAPSHDLE
TGGNSTSSDPGEFDNLNSFYFYETEQFAVLWILFTVIVLGNSAVLFVMFI
NKNRKSRMNYFIKQLALADLCVGLLNVLTDIIWRITISWRAGNLACKAIR
FSQVCVTYSSTYVLVAMSIDRYDAITHPMNFSKSWKRARHLVAGAWLISA
LFSLPILVLYEEKLIQGHPQCWIELGSPIAWQVYMSLVSATLFAIPALII
SACYAIIVKTIWAKGSIFVPTERAGFGAAPARRASSRGIIPRAKVKTVKM
TLTIVFVFIICWSPYIIFDLLQVFGQIPHSQTNIAIATFIQSLAPLNSAA
NPLIYCLFSSQVFRTLSRFPPFKWFTCCCKSYRNNSQQNRCHTVGRRLHN
SCDSMRTLTTSLTVSRRSTNKTNARVVICERPTKVVTVPAMSEVASFLDH
BO34425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCAP-R-PC | 494 | CG33344-PC | 1..494 | 1..494 | 2543 | 100 | Plus |
| AkhR-PD | 443 | CG11325-PD | 47..323 | 132..409 | 372 | 32.7 | Plus |
| AkhR-PB | 443 | CG11325-PB | 47..323 | 132..409 | 372 | 32.7 | Plus |
| AkhR-PA | 443 | CG11325-PA | 47..323 | 132..409 | 372 | 32.7 | Plus |
| AkhR-PC | 455 | CG11325-PC | 47..323 | 132..409 | 372 | 32.7 | Plus |
