BO34428.complete Sequence
1210 bp assembled on 2013-09-16
GenBank Submission: KX794928
> BO34428.complete
GAAGTTATCAGTCGACATGATTGGATATACGCTGCTGTTTCCGCTGGGAT
TATTGGCCATTGCGCAGGCGCAAACGCTGAATGACACAGCAAGCGGTGCT
CTGGCCGTCGCTCAGGAGCCTGGCATGTGGCGCCAGGCCAGACGGAGGAG
TGTCCTGGCAGATAGCTGCGTCACCAATAGCGGCACCACCGGCACCTGTC
TCACACGCTTCAAGTGCATGCGGCAATCGGGCACAGTGAATGGATACTGC
GGCACCTACGGCGTGTGCTGTGAAACCAACCTTCAAGTGGGCTCTTCTAC
GCGCCAGAAGCGAACGATTATCAAAAATCCTGGCGTTTTATCCAGCGATT
TGAATACCTACACCATCGAAGCCTTTAGCAGCAATGTGCAGCAATTGCGA
ATCGATTTTGAGCAGTTCGTGATGCAGCAGCCGACGGATGTGGATGGAGT
TCTCGAGTGCCAGGACTACTTTGAGGCGGGCGGCTTCAAGTTGTGCGGAG
TAAACGATGGCCAGCACCTGTACCTGCCCTTCAATGCGGCTGCGGGAGTC
GATCAGGTGACTCTAACGTTTGTAGTGACCTCCAGAGGAACAGCACCCGT
GTGGAGGTTGATCGTAACCCAGCTGGAAGGTCCACCAGCGAATAGCCGAC
GGCGTTCGAGCACATCTACCGGCCTGGGAACCTCCACCAATTCTCTGCAA
GATCTAAGGGACATCTTTGCCTCGCACCACGCTGACTATGAGCTACTTGC
GCCGCCCGGCTGCCAGCAATACTACACCGATCTGTCGGGCACCATTCGCA
GCTTCAACTTTCAGACTTCAGTGACCAGCAACTATATGCCTGACTTGAGT
TACAACATCTGCATCAGATCAGCTACTTCCGCCAGCATGATCGAATACTC
CTTTAGCAAGTTTTCAATGTCGGTGCAGTCGGACTCCGGCGAGGGCTACG
ACGAGTTCTGCCACGCCACTGTCCACACGACTGGCAGACAGGAGGACTAC
TTGATGATACCGCAGAGCATTCTGGCCAAGAACATGGCCTACCAGCCCAC
CTACTACTGCGGCACCAACGACAACCTGCTGGTTTATGCCTCGCCACCCT
ACATGATGCACTTCTCCAGCGATGACCTCACCTTGAATCGTGATGTGGAG
ACGGGCTTCAGTATGACTTACCGCCAGAGGAATTCGCTACTTGCAAGCTT
TCTAGACCAT
BO34428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17047-RB | 1179 | CG17047-PB | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG17047-RA | 1179 | CG17047-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17047-RB | 1914 | CG17047-RB | 661..1836 | 17..1192 | 5880 | 100 | Plus |
| CG17047-RA | 1310 | CG17047-RA | 57..1232 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13300201..13300819 | 276..894 | 3095 | 100 | Plus |
| 2R | 25286936 | 2R | 13299655..13299913 | 17..275 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 13301100..13301293 | 895..1088 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 13301365..13301469 | 1088..1192 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:54:13 has no hits.
BO34428.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:51:35 Download gff for
BO34428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17047-RA | 57..1232 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:10 Download gff for
BO34428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17047-RA | 57..1232 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:10 Download gff for
BO34428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13299655..13299913 | 17..275 | 100 | -> | Plus |
| 2R | 13300201..13300819 | 276..894 | 100 | -> | Plus |
| 2R | 13301100..13301293 | 895..1088 | 100 | -> | Plus |
| 2R | 13301366..13301469 | 1089..1194 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:51:35 Download gff for
BO34428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9187160..9187418 | 17..275 | 100 | -> | Plus |
| arm_2R | 9187706..9188324 | 276..894 | 100 | -> | Plus |
| arm_2R | 9188605..9188798 | 895..1088 | 100 | -> | Plus |
| arm_2R | 9188871..9188974 | 1089..1194 | 98 | | Plus |
BO34428.pep Sequence
Translation from 16 to 1210
> BO34428.pep
MIGYTLLFPLGLLAIAQAQTLNDTASGALAVAQEPGMWRQARRRSVLADS
CVTNSGTTGTCLTRFKCMRQSGTVNGYCGTYGVCCETNLQVGSSTRQKRT
IIKNPGVLSSDLNTYTIEAFSSNVQQLRIDFEQFVMQQPTDVDGVLECQD
YFEAGGFKLCGVNDGQHLYLPFNAAAGVDQVTLTFVVTSRGTAPVWRLIV
TQLEGPPANSRRRSSTSTGLGTSTNSLQDLRDIFASHHADYELLAPPGCQ
QYYTDLSGTIRSFNFQTSVTSNYMPDLSYNICIRSATSASMIEYSFSKFS
MSVQSDSGEGYDEFCHATVHTTGRQEDYLMIPQSILAKNMAYQPTYYCGT
NDNLLVYASPPYMMHFSSDDLTLNRDVETGFSMTYRQRNSLLASFLDH
BO34428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17047-PB | 392 | CG17047-PB | 1..392 | 1..392 | 2058 | 100 | Plus |
| CG17047-PA | 392 | CG17047-PA | 1..392 | 1..392 | 2058 | 100 | Plus |
| CG15153-PA | 364 | CG15153-PA | 33..355 | 96..390 | 424 | 34.4 | Plus |
| CG4734-PA | 325 | CG4734-PA | 29..322 | 92..385 | 323 | 33.5 | Plus |
| CG13310-PA | 401 | CG13310-PA | 45..279 | 38..295 | 226 | 26.5 | Plus |
