Clone BO34472 Report

Search the DGRC for BO34472

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:344
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG13422-RA
Protein status:BO34472.pep: Imported from assembly
Sequenced Size:490

Clone Sequence Records

BO34472.complete Sequence

490 bp assembled on 2013-09-16

GenBank Submission: KX795373

> BO34472.complete
GAAGTTATCAGTCGACATGGCGCAAAACTCAAAGTTAACAATCTATCTGT
TCCTAGTCGCAATTTCCGTGGGCTCCAGCCTGTCCTACGATGTGCCCAAG
GCCACCGTCAAGGTCAACTCACCGAAGGGATTCGAAGTCTCCATTCCGGA
TGAGCCAGGCATTTCCCTATTCGCTTTTCACGGCAAGGTCAACGAGGAAA
TGGACGATCTGAGCGATCAGACCTGGGCCGCCGATGTGGTCAGTTCACGC
AATGGACGCTGGACTTATCGCAACCGGAACCATCAGCTTAGACCCGGAGA
TGTTCTGTACTATTGGACAACGGCGCGTTACCATGGAGTCGACTATCACA
ACTACAACCAGAGGTATGTGGTTGGGCAGGGGGATTCCCAGAGAATCGAT
GTCAACGGCTCCAACGGCGGTCGCCAGCCGATTGTGGCCAACGGCCATAA
TACGTTCAATATATATGTACAAGCAAGCTTTCTAGACCAT

BO34472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP-like3-RA 459 CG13422-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP-like3-RA 515 CG13422-RA 18..478 12..472 2290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20526328..20526788 12..472 2290 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 13:54:33 has no hits.

BO34472.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:51:43 Download gff for BO34472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13422-RA 39..494 17..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:17 Download gff for BO34472.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP-like3-RA 23..478 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:17 Download gff for BO34472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20526333..20526788 17..474 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:51:43 Download gff for BO34472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16413838..16414293 17..474 99   Plus

BO34472.pep Sequence

Translation from 16 to 490

> BO34472.pep
MAQNSKLTIYLFLVAISVGSSLSYDVPKATVKVNSPKGFEVSIPDEPGIS
LFAFHGKVNEEMDDLSDQTWAADVVSSRNGRWTYRNRNHQLRPGDVLYYW
TTARYHGVDYHNYNQRYVVGQGDSQRIDVNGSNGGRQPIVANGHNTFNIY
VQASFLDH

BO34472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP-like3-PA 152 CG13422-PA 1..152 1..152 814 100 Plus
GNBP3-PA 490 CG5008-PA 26..121 24..119 317 59.4 Plus
CG12780-PA 100 CG12780-PA 4..96 24..115 316 61.3 Plus
CG30148-PB 124 CG30148-PB 4..121 7..124 284 44.1 Plus
CG30148-PA 124 CG30148-PA 4..121 7..124 284 44.1 Plus